@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : SA2390: (2016-04-03 )
MIRTMMNAKIHRARVTESNLNYVGSITIDSDILEAVDILPNEKVAIVNNNNGARFETYVIAGERGSGKICLNGAASRLVEVGDVVIIMTYAQLNEEEIKNHAPKVAVMNEDNVIIEMIHEKENTIVL

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FMR_B_4(2EEO)
?
[Raw transfer]



NSN_A_9(1UHE)
?
[Raw transfer]



PEG_B_4(3PLX)
PAND_CAMJE
[Raw transfer]



PEG_B_4(3PLX)
PAND_CAMJE
[Raw transfer]



GOL_C_14(3OUG)
PAND_FRATT
[Raw transfer]



NSN_A_9(1UHE)
?
[Raw transfer]



NSN_A_9(1UHE)
?
[Raw transfer]



FMR_B_4(2EEO)
?
[Raw transfer]



CHAIN_D_3(1AW8)
?
[Raw transfer]
-
CHAIN_B_1(1UHE)
?
[Raw transfer]
-
CHAIN_B_1(1UHE)
?
[Raw transfer]
-
CHAIN_A_1(3PLX)
?
[Raw transfer]
-
CHAIN_A_1(3PLX)
?
[Raw transfer]
-
2 PsiBlast_PDB 94.5648%-131 - C4 -1PQE - PAND_ECOLI -
6 PsiBlast_PDB 94.0248%-129 - C4 -1PYQ - PAND_ECOLI -
22 PsiBlast_CBE 93.2548%-129 - C4 -1PYQ - PAND_ECOLI -
3 PsiBlast_PDB 93.1148%-119 - C4 -4CS0 - PAND_ECOLI -
8 PsiBlast_PDB 92.6948%-128 - C4 -1PT0 - PAND_ECOLI -
7 PsiBlast_PDB 92.5948%-121 - C4 -1PT1 - PAND_ECOLI -
23 PsiBlast_CBE 91.9148%-128 - C4 -1PT1 - PAND_ECOLI -
49 HHSearch 91.6248%-126 - C- -2C45 - PAND_MYCTU -
1 PsiBlast_PDB 91.1247%-126 - C- -2C45 - PAND_MYCTU -
4 PsiBlast_PDB 90.3548%-117 - C4 -4AZD - ? -
21 PsiBlast_CBE 89.7948%-115 - C4 -4AZD - ? -
10 PsiBlast_PDB 89.6149%-133 - C4 -3OUG - PAND_FRATT -
51 HHSearch 89.6046%-138 * C4 *3OUG Error PAND_FRATT
5 PsiBlast_PDB 88.4948%-124 - C4 -4CRZ - ? -
54 HHSearch 80.8949%-132 - C4 -1UHE 19.6 ?
17 PsiBlast_PDB 80.7046%-138 - C4 -3TM7 - ? -
13 PsiBlast_PDB 80.0750%-134 - C4 -1UHE 19.6 ?
12 PsiBlast_PDB 80.0248%-130 - C4 -2EEO 3.9 ?
27 PsiBlast_CBE 79.5046%-147 - C4 -3TM7 - ? -
18 PsiBlast_PDB 79.1246%-142 - C4 -4CRY - ? -
53 HHSearch 55.0754% -1 - C4 -3PLX 13.2 ?
9 PsiBlast_PDB 54.9353% 2 - C4 -3PLX 12.8 ?
43 Fugue 17.0254% 67 - C4 -3PLX Error PAND_CAMJE
57 HHSearch 16.0954% 74 - C4 -3PLX Error PAND_CAMJE
41 Fugue 15.2560% 75 - C4 -2EEO Error ?
39 Fugue 13.8547% 86 - C4 -1AW8 Error ?
42 Fugue 13.8354% 73 - C4 -1UHE Error ?
55 HHSearch 12.6854% 89 - C4 -1UHE Error ?