@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0506: (2015-12-16 )
MALFEDIQAVIAEQLNVDAAQVTPEAEFVKDLGADSLDVVELIMALEEKFNIEIPDEQAEKIVNVGDVVKYIEDNKLA

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PSE_B_12(2FAE)
ACP_ECOLI
[Raw transfer]




SXM_B_4(3NY7)
?
[Raw transfer]




PM4_A_14(2FAC)
ACP_ECOLI
[Raw transfer]




PM5_A_12(2FAD)
ACP_ECOLI
[Raw transfer]




PM4_B_15(2FAC)
ACP_ECOLI
[Raw transfer]




1R3_A_5(4KEH)
?
[Raw transfer]




SXM_A_2(2X2B)
ACP_BACSU
[Raw transfer]




1R3_B_6(4KEH)
?
[Raw transfer]




PM8_A_11(2FAE)
ACP_ECOLI
[Raw transfer]




PM5_B_13(2FAD)
ACP_ECOLI
[Raw transfer]




ZMK_B_6(4ETW)
ACP_SHIF8
[Raw transfer]




PSR_A_11(1L0I)
ACP_ECOLI
[Raw transfer]




PSR_A_11(1L0I)
ACP_ECOLI
[Raw transfer]




ZMK_D_5(4ETW)
ACP_SHIF8
[Raw transfer]




IMD_A_16(1T8K)
ACP_ECOLI
[Raw transfer]




1 PsiBlast_PDB 94.8963%-159 - C5 -2EHS - ACP_AQUAE -
6 PsiBlast_PDB 94.8854%-145 - C5 -3GZM - ? -
21 PsiBlast_CBE 93.1354%-147 - C5 -3GZM - ? -
80 HHSearch 93.1055%-137 - C5 -3GZM - ? -
5 PsiBlast_PDB 92.7554%-156 - C5 -3GZL - ? -
10 PsiBlast_PDB 88.6055%-137 - C5 -3EJD - ACP_ECOLI -
11 PsiBlast_PDB 88.5755%-139 - C5 -3EJE - ACP_ECOLI -
4 PsiBlast_PDB 88.3660%-155 - C5 -1X3O - ACP_THET8 -
27 PsiBlast_CBE 88.3155%-140 - C5 -3EJD - ACP_ECOLI -
42 PsiBlast_CBE 88.3055%-159 - C5 -4IHF - ? -
28 PsiBlast_CBE 88.2755%-148 - C5 -3EJD - ACP_ECOLI -
25 PsiBlast_CBE 88.2655%-133 - C5 -3EJE - ACP_ECOLI -
26 PsiBlast_CBE 88.1355%-150 - C5 -3EJD - ACP_ECOLI -
49 PsiBlast_CBE 88.0955%-134 - C5 -4ETW 2.0 ACP_SHIF8
12 PsiBlast_PDB 88.0855%-146 - C5 -4IHF - ? -
50 PsiBlast_CBE 88.0255%-136 - C5 -4ETW 2.0 ACP_SHIF8
39 PsiBlast_CBE 87.9855%-146 - C5 -4IHG - ? -
41 PsiBlast_CBE 87.9355%-152 - C5 -4IHG - ? -
14 PsiBlast_PDB 87.8755%-147 - C5 -4IHH - ? -
86 HHSearch 87.8158%-133 - C5 -1X3O - ACP_THET8 -
48 PsiBlast_CBE 86.3455%-136 - C5 -4KEH 3.4 ?
81 HHSearch 86.1854%-145 * C5 *1L0I 3.0 ACP_ECOLI
53 PsiBlast_CBE 86.0055%-136 - C5 -2FAC 4.7 ACP_ECOLI
17 PsiBlast_PDB 85.9955%-142 - C5 -1T8K 3.9 ACP_ECOLI
16 PsiBlast_PDB 85.6355%-136 - C5 -3NY7 2.9 ?
19 PsiBlast_PDB 85.3155%-128 - C5 -2FAD 4.7 ACP_ECOLI
47 PsiBlast_CBE 85.0455%-132 - C5 -4KEH 3.3 ?
54 PsiBlast_CBE 84.9554%-142 - C5 -1L0I 3.0 ACP_ECOLI
52 PsiBlast_CBE 84.6755%-135 - C5 -2FAD 3.1 ACP_ECOLI
18 PsiBlast_PDB 84.5055%-130 - C5 -2FAC 5.1 ACP_ECOLI
51 PsiBlast_CBE 84.1955%-123 - C5 -2FAE Error ACP_ECOLI
20 PsiBlast_PDB 84.1855%-130 - C5 -2FAE 3.8 ACP_ECOLI
55 PsiBlast_CBE 82.3354%-150 - C5 -2X2B 2.3 ACP_BACSU