@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0591: (2015-12-16 )
MIKKCLFPAAGYGTRFLPITKTIPKEMLPIVDKPLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFDTSYEIEHQIQGTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNEPFAVILADDLCISHEYPSVLKQMTSLYQKYQCSIVAIEEVVLEEVSKYGVIRGEWLEERVYEIKDMVEKPSQEDAPSNLAVIGRYILTPDIFDILRETKPGKNNEIQITDALLTQAKRKRIIAYQFKGKRYDCGSVEGYIEASNAYYKKRL

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GUD_B_14(2PA4)
?
[Raw transfer]



GUD_D_16(2PA4)
?
[Raw transfer]



GUD_A_13(2PA4)
?
[Raw transfer]



UPG_A_5(3JUK)
?
[Raw transfer]



UPG_A_5(3JUK)
?
[Raw transfer]



GUD_A_13(2PA4)
?
[Raw transfer]



UPG_C_13(3JUK)
?
[Raw transfer]



UPG_D_17(3JUK)
?
[Raw transfer]



GUD_C_15(2PA4)
?
[Raw transfer]



UPG_B_9(3JUK)
?
[Raw transfer]
2 PsiBlast_PDB 98.8897%-126 - C2 -3JUK 7.7 ?
22 PsiBlast_CBE 98.7997%-125 - C2 -3JUK 8.1 ?
63 HHSearch 98.6397%-126 - C2 -3JUK 7.7 ?
21 PsiBlast_CBE 97.8597%-123 - C2 -3JUK 8.0 ?
1 PsiBlast_PDB 97.6697%-124 - C2 -3JUJ - ? -
23 PsiBlast_CBE 96.8497%-124 - C2 -3JUK 7.9 ?
24 PsiBlast_CBE 77.5244%-128 - C2 -2UX8 - ? -
27 PsiBlast_CBE 76.4144%-113 - C2 -2UX8 - ? -
30 PsiBlast_CBE 76.2444%-108 - C2 -2UX8 - ? -
29 PsiBlast_CBE 75.9144%-111 - C2 -2UX8 - ? -
25 PsiBlast_CBE 75.1744%-109 * C2 *2UX8 - ? -
26 PsiBlast_CBE 75.1344%-110 - C2 -2UX8 - ? -
28 PsiBlast_CBE 74.7544%-110 - C2 -2UX8 - ? -
67 HHSearch 71.7139%-104 - C2 -2PA4 5.7 ?
33 PsiBlast_CBE 71.6639%-106 - C2 -2PA4 4.4 ?
3 PsiBlast_PDB 70.5439%-105 - C2 -2PA4 5.6 ?
31 PsiBlast_CBE 70.2339%-108 - C2 -2PA4 5.8 ?
32 PsiBlast_CBE 69.5439%-103 - C2 -2PA4 6.0 ?
53 Fugue 62.3528% -98 - C2 -1FXO - ? -
62 HHSearch 60.6324%-108 - C2 -1LVW - ? -