@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0908: (2015-12-19 )
MAQKTLLIITDGIGYRKDSDHNAFFHAKKPTYDLMFKTLPYSLIDTHGLSVGLPKGQMGNSEVGHMCIGAGRVLYQDLVRISLSLQNDELKNNPAFLNTIQKSHVVHLMGLMSDGGVHSHIEHFIALALECEKSHKKVCLHLITDGRDVAPKSALTYLKQMQNICNENIQIATISGRFYAMDRDNRFERIELAYNSLMGLNHTPLSPSEYIQSQYDKNITDEFIIPACFKNYCGMQDDESFIFINFRNDRAREIVSALGQKEFNSFKRQAFKKLHIATMTPYDNSFPYPVLFPKESVQNTLAEVVSQHNLTQSHIAETEKYAHVTFFINGGVETPFKNENRVLIQSPKVTTYDLKPEMSAKGVTLAVLEQMRLGTDLIIVNFANGDMVGHTGNFEASIKAVEAVDACLGEILSLAKELDYAMLLTSDHGNCERMKDENQNPLTNHTAGSVYCFVLGNGVKSIKNGALNNIASSVLKLMGIKAPATMDEPLF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2PG_A_4(1O98)
GPMI_GEOSE
[Raw transfer]



2PG_A_4(1EQJ)
GPMI_GEOSE
[Raw transfer]



2PG_A_4(1O98)
GPMI_GEOSE
[Raw transfer]



2PG_A_3(1O99)
GPMI_GEOSE
[Raw transfer]



3PG_A_4(1EJJ)
GPMI_GEOSE
[Raw transfer]



3PG_B_5(3IGY)
?
[Raw transfer]



3PG_A_4(1EJJ)
GPMI_GEOSE
[Raw transfer]
3 PsiBlast_PDB 98.4344%-110 - C4 -4NWX - ? -
4 PsiBlast_PDB 97.8444%-109 - C4 -4QAX - ? -
1 PsiBlast_PDB 97.3944%-109 - C4 -4MY4 - ? -
2 PsiBlast_PDB 97.2944%-110 - C4 -4NWJ - ? -
42 Fugue 95.4743% -97 - C4 -1EJJ 6.4 GPMI_GEOSE
21 HHSearch 94.5043% -98 - C4 -1O98 6.2 GPMI_GEOSE
7 PsiBlast_PDB 94.2942% -97 - C4 -1O98 6.2 GPMI_GEOSE
5 PsiBlast_PDB 93.3642% -97 - C4 -1EJJ 6.4 GPMI_GEOSE
6 PsiBlast_PDB 93.2442% -96 - C4 -1EQJ 5.7 GPMI_GEOSE
8 PsiBlast_PDB 93.0442% -97 - C4 -1O99 5.9 GPMI_GEOSE
9 PsiBlast_PDB 92.7642%-101 - C4 -2IFY - GPMI_BACAN -
22 HHSearch 81.3730% -85 - C4 -3IGZ - ? -
11 PsiBlast_PDB 80.1429% -90 - C4 -3IGY 6.0 ?
12 PsiBlast_PDB 79.8029% -90 - C4 -3IGZ - ? -
10 PsiBlast_PDB 78.6229% -90 - C4 -3NVL - ? -
38 HHSearch 41.9915% -78 - C4 -1K7H - ? -
44 Fugue 40.1316% -34 - C4 -2ZKT - APGM_PYRHO -
23 HHSearch 38.4413% -62 - C4 -2W8D - LTAS2_BACSU -
28 HHSearch 36.7915% -52 - C4 -3LXQ - ? -
26 HHSearch 34.7220% -50 - C4 -3M7V - DEOB_STRMU -