@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : jhp_0910: (2015-12-19 )
MNFQENLAALDLEYLWHPCSQMQEHQNFPIIPIKKAQGIYLYDFNDNAYMDLISSWWVNLFGHNNAYISQQLKNQIDNLEHVLLASFSHKPIITLSQRLCQLTGMDKCFYADNGSSCIEIALKMSYHAHFLKNQTRRKKLFLSLSNSYHGETLGALSVGDVKLYKDTYTPLLLKNLITPVPKNDSEIENSLNALKRLLDKHGEEICAFIAEPLLQCAGNMHIYSAKYLKQAVLWCKQKNIHIIFDEIATGFGRTGSMFAYEQCGIKPDFLCLSKGISGGYLPLSALLTHNEIYNQFYAPYEENKAFLHSHSYTGNALACACANATLDIFEKENVIEKNKALSEFIFSALQNALKPLIERQVVSDLRHLGMVFAFEVFLQTKERLSLAVFKKALKKGLLLRPLNNTIYLMPPYIITHEEIKKAIAGLVEAIDELKKAENK

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2B9_A_3(4MQR)
BIOA_MYCTU
[Raw transfer]




2B6_A_7(4MQQ)
BIOA_MYCTU
[Raw transfer]




KAP_B_7(1QJ3)
BIOA_ECOLI
[Raw transfer]




2B1_A_3(4MQP)
BIOA_MYCTU
[Raw transfer]




KAP_A_4(4CXQ)
BIOA_MYCTU
[Raw transfer]




PL8_A_3(3TFU)
BIOA_MYCTU
[Raw transfer]




PLP_A_5(1S07)
BIOA_ECOLI
[Raw transfer]




ACZ_B_4(1MLY)
BIOA_ECOLI
[Raw transfer]




PLP_B_6(1S07)
BIOA_ECOLI
[Raw transfer]




2BG_A_4(4CXR)
BIOA_MYCTU
[Raw transfer]




PLP_A_3(4XEW)
?
[Raw transfer]




PLP_A_4(4WYF)
?
[Raw transfer]




3W1_A_5(4WYG)
?
[Raw transfer]




PLP_A_3(4WYC)
?
[Raw transfer]




PLP_B_8(1MLY)
BIOA_ECOLI
[Raw transfer]




PLP_B_8(1MLZ)
BIOA_ECOLI
[Raw transfer]




PLP_A_5(1MGV)
BIOA_ECOLI
[Raw transfer]




PLP_A_3(4W1X)
BIOA_MYCTU
[Raw transfer]




PLP_A_3(3TFT)
BIOA_MYCTU
[Raw transfer]




PLP_A_3(4CXQ)
BIOA_MYCTU
[Raw transfer]




PLP_A_3(4WYG)
?
[Raw transfer]




PLP_B_6(1QJ3)
BIOA_ECOLI
[Raw transfer]




PLP_B_6(1MGV)
BIOA_ECOLI
[Raw transfer]




PLP_B_8(1DTY)
BIOA_ECOLI
[Raw transfer]




IPA_A_7(1MGV)
BIOA_ECOLI
[Raw transfer]




PLP_A_3(4WYE)
?
[Raw transfer]




PLP_A_7(1DTY)
BIOA_ECOLI
[Raw transfer]




PLP_B_6(1QJ5)
BIOA_ECOLI
[Raw transfer]




PLP_A_3(4CXR)
BIOA_MYCTU
[Raw transfer]




PLP_A_7(1DTY)
BIOA_ECOLI
[Raw transfer]




3GS_A_4(4W1V)
BIOA_MYCTU
[Raw transfer]




IPA_B_8(1MGV)
BIOA_ECOLI
[Raw transfer]




30 PsiBlast_CBE 91.4834%-121 - C1 -1S08 - BIOA_ECOLI -
21 PsiBlast_CBE 90.6435%-127 - C1 -3DOD - BIOK_BACSU -
2 PsiBlast_PDB 89.8135%-126 - C1 -3DRD - BIOK_BACSU -
28 PsiBlast_CBE 88.5734%-114 - C1 -1MGV 3.1 BIOA_ECOLI
1 PsiBlast_PDB 88.5435%-126 - C1 -3DOD - BIOK_BACSU -
32 PsiBlast_CBE 88.1834%-116 - C1 -1S06 - BIOA_ECOLI -
29 PsiBlast_CBE 87.9834%-115 - C1 -1S0A - BIOA_ECOLI -
26 PsiBlast_CBE 87.8334%-116 - C1 -1MLY 4.6 BIOA_ECOLI
23 PsiBlast_CBE 87.6234%-115 - C1 -1QJ5 3.1 BIOA_ECOLI
25 PsiBlast_CBE 86.8634%-115 - C1 -1MLZ 3.4 BIOA_ECOLI
5 PsiBlast_PDB 86.7034%-114 - C1 -1S07 3.0 BIOA_ECOLI
27 PsiBlast_CBE 86.4634%-115 - C1 -1S07 4.2 BIOA_ECOLI
31 PsiBlast_CBE 86.2634%-113 - C1 -1S09 - BIOA_ECOLI -
24 PsiBlast_CBE 86.1434%-116 - C1 -1QJ3 3.7 BIOA_ECOLI
3 PsiBlast_PDB 84.9635%-110 - C1 -1DTY 3.6 BIOA_ECOLI
4 PsiBlast_PDB 84.8634%-114 - C1 -1MGV 2.5 BIOA_ECOLI
22 PsiBlast_CBE 83.5935%-111 - C1 -1DTY 2.8 BIOA_ECOLI
34 HHSearch 81.8834%-119 - C1 -3DOD - BIOK_BACSU -
57 Fugue 81.3734%-114 - C1 -1DTY 3.6 BIOA_ECOLI
12 PsiBlast_PDB 80.3130%-115 - C1 -4CXQ 4.0 BIOA_MYCTU
10 PsiBlast_PDB 79.8230%-114 - C1 -4MQQ 6.7 BIOA_MYCTU
16 PsiBlast_PDB 79.3930%-114 - C1 -4WYE 2.6 ?
8 PsiBlast_PDB 79.3730%-116 - C1 -3TFU 5.5 BIOA_MYCTU
17 PsiBlast_PDB 78.8530%-114 - C1 -4WYF 3.3 ?
19 PsiBlast_PDB 78.2830%-113 - C1 -4XEW 3.7 ?
14 PsiBlast_PDB 78.0230%-116 - C1 -4W1X 3.4 BIOA_MYCTU
11 PsiBlast_PDB 77.5030%-114 - C1 -4MQR 6.4 BIOA_MYCTU
6 PsiBlast_PDB 76.6530%-116 - C1 -4W1V 4.8 BIOA_MYCTU
18 PsiBlast_PDB 76.6330%-112 - C1 -4WYG 4.3 ?
9 PsiBlast_PDB 76.6330%-117 - C1 -4MQP 7.0 BIOA_MYCTU
7 PsiBlast_PDB 76.4330%-116 - C1 -3TFT 3.1 BIOA_MYCTU
15 PsiBlast_PDB 75.8430%-113 - C1 -4WYC 2.6 ?
13 PsiBlast_PDB 75.6530%-114 - C1 -4CXR 3.1 BIOA_MYCTU