@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo0319: (2016-03-14 )
MHTNTGFPADFLWGGAAAANQFEGAYNVDGKGLSVQDVTPKGGFGHITDGPTPDNLKLEGIDFYHRYKDDVKLFAEMGFKVFRTSIAWSRIFPNGDETEPNEAGLQFYDDLFDELLAHNIEPLITLSHYETPLHLSKTYDGWVNRKMIDFYENYVRTVFNRYKGKVKYWLTFNEINSILHAPFMSGGISTSPDKLSQKDLYQAVHHELVASALATKIGHEIMPEAQIGCMVLAMPTYPLTSNPDDIIAVMEAERKNYFFSDVHVRGTYPGYMKRYFRENNIELDVTEEDLEILKNTVDFISFSYYMSTTETADESKRKAGAGNILGGVQNPYLEASEWGWQIDPQGLRVVLNEFWDRYQKPLFIVENGLGAIDQLEKDENGNYTVNDDYRINYLSAHLSQVKEAIKDGVDLMGYTSWGCIDLVSASTAEMKKRYGFIYVDRNNDGTGTLNRYKKKSFDWYKNVIATNGEDL

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

1FT_B_3(4IPN)
?
[Raw transfer]




BG6_A_3(4F66)
?
[Raw transfer]




BG6_B_7(4F66)
?
[Raw transfer]




P53_A_2(4F79)
?
[Raw transfer]




6GB_B_5(4GPN)
?
[Raw transfer]




6GB_A_3(4GPN)
?
[Raw transfer]




1FT_E_4(4IPN)
?
[Raw transfer]




BGP_B_4(4PBG)
LACG_LACLL
[Raw transfer]




BGP_A_3(4PBG)
LACG_LACLL
[Raw transfer]




GOL_A_3(4IPL)
?
[Raw transfer]




YLL_B_6(2JAL)
BGLA_THEMA
[Raw transfer]




BGC_A_2(3QOM)
?
[Raw transfer]




21 PsiBlast_CBE 98.1169% -81 - C2 -4IPN 2.4 ?
1 PsiBlast_PDB 97.4869% -81 - C2 -4IPL 2.7 ?
2 PsiBlast_PDB 96.9969% -84 - C2 -4IPN 4.3 ?
8 PsiBlast_PDB 89.5253% -81 - C2 -3QOM 1.4 ?
26 PsiBlast_CBE 89.4851% -79 - C2 -2XHY - BGLA_ECOLI -
9 PsiBlast_PDB 89.2553% -81 - C2 -4GZE - ? -
6 PsiBlast_PDB 88.6251% -78 - C2 -2XHY - BGLA_ECOLI -
24 PsiBlast_CBE 88.3751% -80 - C2 -2XHY - BGLA_ECOLI -
25 PsiBlast_CBE 88.2751% -79 - C2 -2XHY - BGLA_ECOLI -
22 PsiBlast_CBE 87.5455% -75 - C2 -4F66 5.1 ?
7 PsiBlast_PDB 87.2253% -73 - C2 -3PN8 - ? -
102 HHSearch 87.1352% -75 - C2 -2XHY - BGLA_ECOLI -
3 PsiBlast_PDB 87.0955% -73 - C2 -4F66 5.6 ?
23 PsiBlast_CBE 87.0654% -76 - C2 -4GPN 5.8 ?
5 PsiBlast_PDB 86.1154% -74 - C2 -4GPN 4.7 ?
4 PsiBlast_PDB 85.9054% -75 - C2 -4F79 4.8 ?
33 PsiBlast_CBE 77.2133% -72 - C2 -4PTX - ? -
121 Fugue 77.1835% -78 - C2 -1QOX - BGLA_BACCI -
34 PsiBlast_CBE 76.6333% -74 - C2 -4PTW - ? -
17 PsiBlast_PDB 76.4633% -72 - C2 -4PTW - ? -
45 PsiBlast_CBE 73.3134% -69 - C2 -4PBG 4.9 LACG_LACLL
44 PsiBlast_CBE 72.9334% -68 - C2 -4PBG 4.7 LACG_LACLL
60 PsiBlast_CBE 70.8431% -76 - C2 -2JAL 3.3 BGLA_THEMA