@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1034: (2016-03-20 )
MKKHYQIAIDQSTSGTKVLLFKEGKLVDRLDKKHRQLYPKKGWVEHNPIEICQNVRTLIADILTKHDLITADIERLALTNQRETIVAWDKQTGKPLYNAIVWQCNRTKEICETLKEAGYEKRIKQLTGLKIDSYFSASKMMWLLENISAVRDAASRNQLAFGTMDAWLLFSLTDDSNYFTDRTNASRTLLYDIEKNDWSDELLELFGVKRAYLPEVKQSAGSFGSYQEIPIHSVMADSEAALYGQGCDTFGAVKATLGTGCSVMMQIGENRLPENDAILTTLAWDVAGVNQFALEGIIRSCGDTLVFLSEQLELFNDYDTACKRAFQLPCNEGVVLIPGQLGLGAPYWNTDIRAEILGLTREHTKWHIIRAGFTSIAFQIKAVIDQMELMIGQNIKRLQVDGGLTKQHELMQYLADVLKAEVAVSPAEELSAIGAIEIADNNLQNKRTIAKLYQPSITHTHALEDFQEWEKQVKSSILKIQKVRNFK

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

G3H_G_5(1GLE)
GLPK_ECOLI
[Raw transfer]




G3H_G_5(1GLC)
GLPK_ECOLI
[Raw transfer]




G3H_G_4(1GLD)
GLPK_ECOLI
[Raw transfer]




GOL_O_7(3H46)
GLPK_ENTCA
[Raw transfer]




GOL_O_8(3H3N)
GLPK_ENTCA
[Raw transfer]




GOL_O_3(3D7E)
GLPK_ENTCA
[Raw transfer]




GOL_O_3(3FLC)
GLPK_ENTCA
[Raw transfer]




GOL_O_8(1BWF)
GLPK_ECOLI
[Raw transfer]




GOL_O_7(1GLJ)
GLPK_ECOLI
[Raw transfer]




GOL_Y_6(1GLJ)
GLPK_ECOLI
[Raw transfer]




GOL_Y_7(1GLL)
GLPK_ECOLI
[Raw transfer]




GOL_G_9(1GLA)
GLPK_ECOLI
[Raw transfer]




GOL_Y_7(1BWF)
GLPK_ECOLI
[Raw transfer]




GOL_I_9(1BOT)
GLPK_ECOLI
[Raw transfer]




GOL_Z_5(1BO5)
GLPK_ECOLI
[Raw transfer]




GOL_O_8(1GLL)
GLPK_ECOLI
[Raw transfer]




GOL_G_7(1BOT)
GLPK_ECOLI
[Raw transfer]




GOL_O_4(1BO5)
GLPK_ECOLI
[Raw transfer]




EDO_B_21(2W41)
?
[Raw transfer]




GOL_C_3(1XUP)
GLPK_ENTCA
[Raw transfer]




EDO_A_5(2W41)
?
[Raw transfer]




MPD_C_3(2D4W)
?
[Raw transfer]




MPD_C_3(2D4W)
?
[Raw transfer]




MPD_D_4(2D4W)
?
[Raw transfer]




EDO_A_9(2W41)
?
[Raw transfer]




EDO_B_25(2W41)
?
[Raw transfer]




18 PsiBlast_PDB 96.0736% -79 - C4 -3FLC 3.3 GLPK_ENTCA
42 PsiBlast_CBE 95.6536% -85 - C4 -3H45 - GLPK_ENTCA -
16 PsiBlast_PDB 95.6536% -85 - C4 -3H45 - GLPK_ENTCA -
24 PsiBlast_CBE 95.3838% -83 - C4 -3EZW - GLPK_ECOLI -
40 PsiBlast_CBE 95.2736% -81 - C4 -3H45 - GLPK_ENTCA -
39 PsiBlast_CBE 95.1936% -81 - C4 -3H46 3.3 GLPK_ENTCA
17 PsiBlast_PDB 95.1836% -81 - C4 -3H46 - GLPK_ENTCA -
25 PsiBlast_CBE 95.1638% -84 - C4 -3EZW - GLPK_ECOLI -
90 HHSearch 94.9837% -80 - C4 -3H3N - GLPK_ENTCA -
2 PsiBlast_PDB 94.5538% -83 - C4 -3EZW - GLPK_ECOLI -
30 PsiBlast_CBE 94.4338% -79 - C4 -3EZW - GLPK_ECOLI -
41 PsiBlast_CBE 94.2636% -80 - C4 -3H45 - GLPK_ENTCA -
21 PsiBlast_CBE 94.2338% -83 - C4 -1BU6 - GLPK_ECOLI -
32 PsiBlast_CBE 93.8638% -81 - C4 -1GLF - GLPK_ECOLI -
27 PsiBlast_CBE 93.5938% -83 - C4 -3EZW - GLPK_ECOLI -
5 PsiBlast_PDB 93.5338% -81 - C4 -1GLC 3.8 GLPK_ECOLI
38 PsiBlast_CBE 93.4538% -84 - C4 -1BWF 2.4 GLPK_ECOLI
31 PsiBlast_CBE 93.4238% -82 - C4 -1GLF - GLPK_ECOLI -
23 PsiBlast_CBE 93.3538% -80 - C4 -1BU6 - GLPK_ECOLI -
1 PsiBlast_PDB 93.3538% -80 - C4 -1BU6 - GLPK_ECOLI -
37 PsiBlast_CBE 93.0638% -84 - C4 -1GLJ 2.7 GLPK_ECOLI
35 PsiBlast_CBE 92.9338% -79 - C4 -1BO5 3.5 GLPK_ECOLI
9 PsiBlast_PDB 92.8638% -78 - C4 -1BOT 3.9 GLPK_ECOLI
49 PsiBlast_CBE 92.6139% -88 - C4 -3D7E 3.1 GLPK_ENTCA
47 PsiBlast_CBE 92.5939% -88 - C4 -3H3N 3.1 GLPK_ENTCA
6 PsiBlast_PDB 92.5938% -78 - C4 -1GLD 3.9 GLPK_ECOLI
34 PsiBlast_CBE 92.5638% -82 - C4 -1BOT 4.2 GLPK_ECOLI
10 PsiBlast_PDB 92.5538% -80 - C4 -1BO5 3.9 GLPK_ECOLI
7 PsiBlast_PDB 92.3838% -80 - C4 -1GLE 3.9 GLPK_ECOLI
36 PsiBlast_CBE 92.2638% -85 - C4 -1GLL 3.6 GLPK_ECOLI
11 PsiBlast_PDB 92.1438% -78 - C4 -1BWF 3.4 GLPK_ECOLI
12 PsiBlast_PDB 92.0738% -83 - C4 -1GLJ 2.8 GLPK_ECOLI
13 PsiBlast_PDB 91.7138% -80 - C4 -1GLL 3.4 GLPK_ECOLI
3 PsiBlast_PDB 91.4538% -80 - C4 -1GLA 2.2 GLPK_ECOLI
93 HHSearch 90.3235% -81 - C4 -2D4W 3.5 ?
53 PsiBlast_CBE 90.0733% -86 - C4 -2D4W 3.5 ?
52 PsiBlast_CBE 89.3833% -84 - C4 -2D4W 3.3 ?
66 PsiBlast_CBE 87.0333% -96 - C4 -2W41 2.9 ?
67 PsiBlast_CBE 86.9533% -96 - C4 -2W41 3.0 ?
51 PsiBlast_CBE 84.2839% -75 - C4 -1XUP 2.4 GLPK_ENTCA