@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1605: (2016-03-26 )
MTIYHFVGIKGSGMSALAQILHDKGFQVQGSDVDKYFFTQKALEEKQIPIMTFSADNIQEGLTIIAGNAFPDTHEEIERALELGLSVIRYHKFLGQLIDGYTSIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDGTGSGTKDAEYFALEACEYQRHFLAYKPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFALGDDAELRKLTLDIPIIYFGFGEENEFQAKNVIKETTGTKFDVYHREEFLSSFEIPAYGDHNVLNALSVIALCDYEGLPVEDVKNELKTFEGVKRRFSITEKGNQVLVDDYAHHPSEIRATVNAARQKYPDKKVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTGNLTIADLAHKTKGNHIIKEEHTEELLKYPEAVILFMGAGDVQKFQAAYEKVLDHEFLTEADLKKSAIN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_8(1P3D)
MURC_HAEIN
[Raw transfer]



ACP_A_3(1GQY)
MURC_HAEIN
[Raw transfer]



AMP_A_3(4HV4)
MURC_YERPE
[Raw transfer]
1 PsiBlast_PDB 94.2730% -84 - C1 -4HV4 7.5 MURC_YERPE
30 HHSearch 90.7826% -87 * C1 *1P3D - MURC_HAEIN -
3 PsiBlast_PDB 89.7428% -79 - C1 -2F00 - MURC_ECOLI -
5 PsiBlast_PDB 81.3029% -77 - C1 -1P31 - MURC_HAEIN -
6 PsiBlast_PDB 81.2929% -73 - C1 -1P3D 9.3 MURC_HAEIN
2 PsiBlast_PDB 78.7528% -79 - C1 -1GQY 9.6 MURC_HAEIN
35 HHSearch 76.3328% -96 - C1 -3EAG - ? -
8 PsiBlast_PDB 73.1125%-100 - C1 -3EAG - ? -
32 HHSearch 70.8321% -68 - C1 -3LK7 - MURD_STRA5 -
36 HHSearch 62.3116% -70 - C1 -2VOS - ? -
9 PsiBlast_PDB 62.0526% -79 - C1 -3LK7 - MURD_STRA5 -
37 HHSearch 61.1016% -65 - C1 -1O5Z - ? -
39 HHSearch 58.9618% -72 - C1 -3NRS - ? -
10 PsiBlast_PDB 58.4025% -59 - C1 -4QDI - ? -
15 PsiBlast_PDB 57.4921% -61 - C1 -3ZM5 - ? -
11 PsiBlast_PDB 56.8425% -58 - C1 -4ZIY - ? -
18 PsiBlast_PDB 56.7921% -63 - C1 -2AM2 - ? -
17 PsiBlast_PDB 56.7521% -63 - C1 -2AM1 - ? -
16 PsiBlast_PDB 55.0821% -59 - C1 -3ZM6 - ? -
4 PsiBlast_PDB 54.9631% 6 - C1 -1J6U - MURC_THEMA -