@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo1897: (2016-03-29 )
MDLPLSKRVKGVAPSPTLAITAKAKQMKQEGIDVIGLGAGEPDFNTPQNIIDAAIESMNKGFTKYTPSSGIIELKQAIVDKLKKDQFLNYETNQIFVGTGAKHVLYSAFQTILDPGDEVIIPVPYWVTYPEQVKLAGGIPVFVETGFDADFKISAADFEKAITKKTKAIVLNSPNNPSGMCYTKEELIAIGEVAEKHQIYILSDEIYEKLYYGNKADLVSIASLSDRLYDLTIVINGVSKAYSMTGWRIGYAAANKEIIAGMSKLADHLTSNPTANAQYAALEAYVGSQEVPEKMYQAFEERMERFYPELNSIPGFKPKKPDGAFYFFIEVKEAAHKKGFQDVDAFVAALLEEAKVAVIPGSGFGMPDYIRLSYATNPDLFQEAINRIKSFMK

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ASP_D_4(1GCK)
AAT_THET8
[Raw transfer]



GLU_D_4(1GDE)
?
[Raw transfer]



PLP_E_5(1GDE)
?
[Raw transfer]



GOL_A_8(3E2Y)
KAT3_MOUSE
[Raw transfer]



PLP_F_6(1GDE)
?
[Raw transfer]



GLU_C_3(1GDE)
?
[Raw transfer]



PLP_A_12(1O4S)
AAT_THEMA
[Raw transfer]



PLP_B_13(1O4S)
AAT_THEMA
[Raw transfer]



PLP_A_12(1O4S)
AAT_THEMA
[Raw transfer]



PLP_F_6(1GCK)
AAT_THET8
[Raw transfer]



PLP_B_4(1GD9)
?
[Raw transfer]



GOL_A_3(3E2F)
KAT3_MOUSE
[Raw transfer]



PLP_B_4(1DJU)
?
[Raw transfer]



PLP_A_3(1GD9)
?
[Raw transfer]



PLP_A_3(1GD9)
?
[Raw transfer]



PLP_A_5(1B5O)
AAT_THET8
[Raw transfer]



PLP_E_5(1GCK)
AAT_THET8
[Raw transfer]



ASP_C_3(1GCK)
AAT_THET8
[Raw transfer]



PLP_A_5(5BJ4)
AAT_THET8
[Raw transfer]



PLP_A_5(1B5P)
AAT_THET8
[Raw transfer]



PLP_B_6(5BJ4)
AAT_THET8
[Raw transfer]



PLP_A_5(1B5P)
AAT_THET8
[Raw transfer]



PLP_A_3(1DJU)
?
[Raw transfer]



PLP_A_3(1J32)
?
[Raw transfer]



PLP_B_4(1J32)
?
[Raw transfer]



PLP_B_6(1B5P)
AAT_THET8
[Raw transfer]



PLP_B_6(1B5O)
AAT_THET8
[Raw transfer]
21 PsiBlast_CBE 96.4144%-100 - C1 -1J32 5.3 ?
1 PsiBlast_PDB 94.8144% -96 - C1 -1J32 - ? -
48 HHSearch 94.6044%-100 - C1 -1J32 4.8 ?
49 HHSearch 93.8240%-102 * C1 *1B5P 4.8 AAT_THET8
23 PsiBlast_CBE 91.4439% -93 - C1 -1BKG - AAT_THET8 -
24 PsiBlast_CBE 91.3039% -93 - C1 -1BKG - AAT_THET8 -
50 HHSearch 91.2138% -99 - C1 -1GD9 3.7 ?
8 PsiBlast_PDB 91.1638% -94 - C1 -1GC4 - AAT_THET8 -
2 PsiBlast_PDB 91.1539% -93 - C1 -1BKG - AAT_THET8 -
22 PsiBlast_CBE 91.0839% -93 - C1 -1BKG - AAT_THET8 -
29 PsiBlast_CBE 91.0638% -95 - C1 -1GC4 - AAT_THET8 -
31 PsiBlast_CBE 91.0138% -94 - C1 -1GC4 - AAT_THET8 -
4 PsiBlast_PDB 90.7839% -92 - C1 -1GCK 5.5 AAT_THET8
30 PsiBlast_CBE 90.7338% -94 - C1 -1GC4 - AAT_THET8 -
35 PsiBlast_CBE 90.7038% -99 - C1 -1GC3 - AAT_THET8 -
6 PsiBlast_PDB 90.7039% -92 - C1 -1BJW - AAT_THET8 -
36 PsiBlast_CBE 90.5938%-100 - C1 -1GC3 - AAT_THET8 -
13 PsiBlast_PDB 90.5938% -97 - C1 -1GD9 3.7 ?
12 PsiBlast_PDB 90.4738% -96 - C1 -1GDE 4.1 ?
27 PsiBlast_CBE 90.2439% -91 - C1 -1B5P 4.8 AAT_THET8
26 PsiBlast_CBE 89.9839% -90 - C1 -1GCK 6.5 AAT_THET8
25 PsiBlast_CBE 89.9739% -93 - C1 -1B5O 5.3 AAT_THET8
51 HHSearch 89.7541%-101 - C1 -1O4S 4.8 AAT_THEMA
5 PsiBlast_PDB 89.6539% -90 - C1 -1B5P 4.8 AAT_THET8
44 PsiBlast_CBE 89.5938% -95 - C1 -1GDE 4.2 ?
3 PsiBlast_PDB 89.2539% -91 - C1 -1B5O 4.9 AAT_THET8
45 PsiBlast_CBE 89.0738% -96 - C1 -1GD9 3.9 ?
43 PsiBlast_CBE 87.9240% -97 - C1 -1O4S 4.4 AAT_THEMA
11 PsiBlast_PDB 87.7040% -96 - C1 -1O4S 4.8 AAT_THEMA
9 PsiBlast_PDB 86.4538% -96 - C1 -5BJ4 5.1 AAT_THET8
28 PsiBlast_CBE 86.3638% -96 - C1 -5BJ4 5.0 AAT_THET8
46 PsiBlast_CBE 85.5538%-100 - C1 -1DJU 3.9 ?
14 PsiBlast_PDB 85.0138% -99 - C1 -1DJU 3.6 ?