@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2095: (2016-03-31 )
MIYTITLNPAIDRLLFIQGELEKRKTNRVKKTEFDCGGKGLHVSGVLSKFGIKNEALGIAGSDNLDKLYAILKEKHINHDFLVEAGTSTRECFVVLSDDTNGSTMIPEAGFTVSQTNKVNLLKQIAKKVKKEDMVVIAGSPPPHYTLSDFKELLRTVKATGAFLGCDNSGEYLNLAVEMGVDFIKPNEDEVIAILDEKTNSLEENVRKLAEKIPYLVVSLGAKGSICAHNGKLYQVIPPKVQERNDTGAGDVFVGAFIAGLAMNMPITETLKVATGCSASKVMQQDSSSFDLEAAGKLKNQVSIIQLEER

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_2(3IE7)
?
[Raw transfer]




GOL_A_6(3IE7)
?
[Raw transfer]




ATP_B_10(3CQD)
PFKB_ECOLI
[Raw transfer]




ATP_B_9(3UMP)
PFKB_ECOLI
[Raw transfer]




POP_A_6(3UQE)
PFKB_ECOLI
[Raw transfer]




TA6_A_3(3JUL)
?
[Raw transfer]




BGC_A_3(3KZH)
?
[Raw transfer]




3 PsiBlast_PDB 98.0596%-100 - C1 -3IE7 3.5 ?
1 PsiBlast_PDB 97.9597% -99 - C1 -3Q1Y - ? -
2 PsiBlast_PDB 97.2796%-101 - C1 -3HIC - ? -
56 HHSearch 96.7995% -99 - C1 -3IE7 7.1 ?
4 PsiBlast_PDB 95.4696%-107 - C1 -3JUL 2.7 ?
76 Fugue 92.4293% -91 - C1 -3HIC - ? -
15 PsiBlast_PDB 71.6427% -88 - C1 -2JGV - LACC_STAA8 -
17 PsiBlast_PDB 70.1727% -84 - C1 -2JG1 - LACC_STAA8 -
16 PsiBlast_PDB 68.5227% -82 - C1 -2Q5R - LACC_STAAC -
14 PsiBlast_PDB 68.1527% -96 - C1 -3UQD - PFKB_ECOLI -
11 PsiBlast_PDB 67.8627% -97 - C1 -3N1C - PFKB_ECOLI -
9 PsiBlast_PDB 67.6227% -79 - C1 -2F02 - LACC_ENTFA -
5 PsiBlast_PDB 67.5430% -77 - C1 -2JG5 - ? -
7 PsiBlast_PDB 67.5228% -89 - C1 -3UQE 3.0 PFKB_ECOLI
10 PsiBlast_PDB 67.3627% -94 - C1 -3CQD 4.8 PFKB_ECOLI
8 PsiBlast_PDB 67.2327% -79 - C1 -2AWD - LACC_ENTFA -
58 HHSearch 66.8330% -80 - C1 -2JG5 - ? -
60 HHSearch 66.6727% -79 * C1 *2F02 - LACC_ENTFA -
13 PsiBlast_PDB 65.9827% -94 - C1 -3UMP 2.9 PFKB_ECOLI
57 HHSearch 65.8127% -80 - C1 -2JG1 - LACC_STAA8 -