@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2100: (2016-03-31 )
MWRLTGNSSLPIYLQIVDLIETKIMNGELLPEEKLPPERQLAEMFGVNRSTVVRALDELTARAVIIRKQGSGTTVNAEKWGLFAGQSTNWRHYLTQGGFTPAVPYIRQAGVMERANSDNVIDAASGELPLEMTPKMETPSLSWQSFIAEEQQEDEAGYKPLRETIQKQMKEAYGLQTRSEQIFITSGAQQALFLITQCLLKPGDAVAIESPSYFYSLSLFQSAGLRIFALPMDEDGVVISELRDLYHKHRVKMVFVNPTFQNPTGLVMSLKRRKELVKICAHLQIPIVEDDPFSELGALDNQIPAPLKRLDTDNVLYIGSLSKIMGSTTRIGWLIGPTAVIERLALARQEMDFGLSIFPQVLANSVLNTAGYKAHLLQLHHVLEQRRDDLIEAFEAILPSEVTFIKPKGGFHLWVKLPVEFRSVRDFDIFLANDLLVMPGFLFGVKEAVIRVTYARLEKKEARRVAEIIKQILVSKKCEEA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PMP_C_6(3AV7)
?
[Raw transfer]



PMP_A_3(3AV7)
?
[Raw transfer]



PMP_A_3(3WX9)
?
[Raw transfer]



PMP_C_8(3WX9)
?
[Raw transfer]



PLP_A_3(3AOW)
?
[Raw transfer]



PLP_C_5(3AOW)
?
[Raw transfer]



PLP_C_6(3ATH)
?
[Raw transfer]



PLP_C_4(3AOV)
?
[Raw transfer]



PLP_A_3(1WST)
?
[Raw transfer]



BF5_A_3(2XH1)
AADAT_HUMAN
[Raw transfer]
13 PsiBlast_PDB 85.9729%-105 - C3 -2ZC0 - ? -
59 HHSearch 85.6030% -98 - C3 -3AOW 4.1 ?
4 PsiBlast_PDB 84.9233%-113 - C3 -3AV7 5.2 ?
5 PsiBlast_PDB 84.9133%-113 - C3 -3WX9 4.4 ?
21 PsiBlast_CBE 84.7233%-111 - C3 -3WX9 5.9 ?
79 Fugue 84.4325% -94 - C3 -4MGR - GABR_BACSU -
24 PsiBlast_CBE 84.2133%-111 - C3 -3AOW 3.9 ?
6 PsiBlast_PDB 84.1033%-112 - C3 -1X0M - ? -
60 HHSearch 84.0628% -94 - C3 -2ZC0 - ? -
2 PsiBlast_PDB 83.9833%-109 - C3 -3AOW - ? -
3 PsiBlast_PDB 83.9133%-111 - C3 -3ATH - ? -
23 PsiBlast_CBE 83.6933%-112 - C3 -3ATH 4.0 ?
1 PsiBlast_PDB 83.5533%-110 - C3 -3AOV - ? -
25 PsiBlast_CBE 83.2933%-110 - C3 -3AOV 3.4 ?
22 PsiBlast_CBE 83.2633%-112 - C3 -3AV7 4.6 ?
7 PsiBlast_PDB 81.3630%-111 - C3 -1WST 4.0 ?
9 PsiBlast_PDB 79.3028%-118 - C3 -2ZP7 - LYSN_THET2 -
61 HHSearch 78.6127% -97 - C3 -2ZYJ - LYSN_THET2 -
58 HHSearch 77.6824% -98 * C3 *1VP4 - ? -
12 PsiBlast_PDB 77.4928%-114 - C3 -2ZYJ - LYSN_THET2 -