@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Lmo2771: (2016-04-07 )
MSNTKFPDGFMWGGATAANQFEGGYNLGGKGLACADLFTGGTHTEPRRITAQLEESTFYPSHEAVDFYHHYKEDIKLMAEAGFKVFRMSINWTRIFPTGKEAEPNEEGLQFYEDVFNELKKHQIEPLVTIAHFDIPLALTNEVNGWASRDLIDYYLHFCEVIFKRYKHLVKHWLTFNEINTATMEIGNYLSLGIRHAEGDFLHQKDDPKVRYQALHHQFVASAKAVKLGHSINPDFMIGCMIAYMPRYPRTCEPSDVLLAKQTEAMHSHFCGDVHVKGYYPFYAKTFFKDNGIELEFDPEDEQILREGTVDFYTFSYYLTLCASNDPAYKNSGKSVIGGAENPYLKTNDWGMQTDPVGLRIALNDLYTRYNIPLMVVENGLGAFDKLEDDGTINDPYRIDYFKEHILQMHKAIQDGVDLIGFTIWGCIDLVSASTGEMAKRYGIIYVDKYDDGTGDYSRKKKASYYWYKDVISSNGEIGLEE

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BG6_A_3(4F66)
?
[Raw transfer]




6GB_B_5(4GPN)
?
[Raw transfer]




1FT_B_3(4IPN)
?
[Raw transfer]




BG6_B_7(4F66)
?
[Raw transfer]




P53_A_2(4F79)
?
[Raw transfer]




6GB_A_3(4GPN)
?
[Raw transfer]




BGP_B_4(4PBG)
LACG_LACLL
[Raw transfer]




BGP_A_3(4PBG)
LACG_LACLL
[Raw transfer]




1FT_E_4(4IPN)
?
[Raw transfer]




GOL_A_2(3VIH)
?
[Raw transfer]




GOL_A_3(4IPL)
?
[Raw transfer]




YLL_B_6(2JAL)
BGLA_THEMA
[Raw transfer]




BGC_A_2(3QOM)
?
[Raw transfer]




5 PsiBlast_PDB 96.5650% -93 - C1 -3PN8 - ? -
24 PsiBlast_CBE 95.4051% -90 - C1 -4F66 4.9 ?
23 PsiBlast_CBE 94.8651% -95 - C1 -2XHY - BGLA_ECOLI -
25 PsiBlast_CBE 94.6650% -93 - C1 -4GPN 5.3 ?
3 PsiBlast_PDB 94.6050% -91 - C1 -4F79 5.0 ?
22 PsiBlast_CBE 94.2051% -93 - C1 -2XHY - BGLA_ECOLI -
2 PsiBlast_PDB 94.0951% -90 - C1 -4F66 5.4 ?
1 PsiBlast_PDB 93.6851% -96 - C1 -2XHY - BGLA_ECOLI -
9 PsiBlast_PDB 93.4451% -93 - C1 -4GZE - ? -
4 PsiBlast_PDB 92.8950% -89 - C1 -4GPN 4.0 ?
8 PsiBlast_PDB 92.8151% -90 - C1 -3QOM 3.4 ?
110 HHSearch 92.2952% -93 - C1 -2XHY - BGLA_ECOLI -
21 PsiBlast_CBE 91.7551% -93 - C1 -2XHY - BGLA_ECOLI -
7 PsiBlast_PDB 91.1149% -95 - C1 -4IPN 3.6 ?
26 PsiBlast_CBE 90.1949% -90 - C1 -4IPN 3.3 ?
6 PsiBlast_PDB 89.9949% -94 - C1 -4IPL 2.7 ?
75 PsiBlast_CBE 80.8131% -92 - C1 -1OIN - BGLA_THEMA -
74 PsiBlast_CBE 80.8031% -93 - C1 -1OIN - BGLA_THEMA -
70 PsiBlast_CBE 80.6731% -92 - C1 -1W3J - BGLA_THEMA -
66 PsiBlast_CBE 80.5931% -90 - C1 -2CBV - BGLA_THEMA -
48 PsiBlast_CBE 79.7631% -90 - C1 -2JAL 2.2 BGLA_THEMA
84 PsiBlast_CBE 73.7032% -83 - C1 -4PBG 3.5 LACG_LACLL
85 PsiBlast_CBE 72.1932% -82 - C1 -4PBG 3.3 LACG_LACLL
87 PsiBlast_CBE 63.4831% -71 - C1 -3VIH 3.3 ?