@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0001: (2015-11-27 )
MTENEQLFWNRVLELSRSQIAPAAYEFFVLEARLLKIEHQTAVITLDNIEMKKLFWEQNLGPVILTAGFEIFNAEITANYVSNDLHLQETSFSNYQQSSNEVNTLPIRKIDSNLKEKYTFANFVQGDENRWAVSASIAVADSPGTTYNPLFIWGGPGLGKTHLLNAIGNQVLRDNPNARVLYITAENFINEFVSHIRLDSMEELKEKFRNLDLLLIDDIQSLAKKTLGGTQEEFFNTFNALHTNDKQIVLTSDRNPNQLNDLEERLVTRFSWGLPVNITPPDFETRVAILTNKIQEYPYDFPQDTIEYLAGEFDSNVRELEGALKNISLVADFKHAKTITVDIAAEAIRARKNDGPIVTVIPIEEIQIQVGKFYGVTVKEIKATKRTQDIVLARQVAMYLAREMTDNSLPKIGKEFGGRDHSTVLHAYNKIKNMVAQDDNLRIEIETIKNKIR

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_B_8(2Z4R)
DNAA_THEMA
[Raw transfer]




ADP_C_9(2Z4R)
DNAA_THEMA
[Raw transfer]




ADP_A_7(2Z4R)
DNAA_THEMA
[Raw transfer]




ADP_A_3(1L8Q)
DNAA_AQUAE
[Raw transfer]




ADP_A_3(1L8Q)
DNAA_AQUAE
[Raw transfer]




ADP_A_3(2Z4S)
DNAA_THEMA
[Raw transfer]




ADP_A_3(2Z4S)
DNAA_THEMA
[Raw transfer]




ADP_A_3(1L8Q)
DNAA_AQUAE
[Raw transfer]




39 HHSearch 90.8336% -79 - C1 -1L8Q 8.4 DNAA_AQUAE
4 PsiBlast_PDB 90.0734% -88 - C1 -1L8Q 8.4 DNAA_AQUAE
28 Fugue 89.8435% -80 - C1 -1L8Q 8.4 DNAA_AQUAE
23 PsiBlast_CBE 86.9534% -85 - C1 -2HCB - DNAA_AQUAE -
25 PsiBlast_CBE 86.6334% -84 - C1 -2HCB - DNAA_AQUAE -
24 PsiBlast_CBE 85.9134% -81 - C1 -2HCB - DNAA_AQUAE -
3 PsiBlast_PDB 85.4834% -84 - C1 -2HCB - DNAA_AQUAE -
22 PsiBlast_CBE 82.2534% -84 - C1 -2Z4R 8.5 DNAA_THEMA
1 PsiBlast_PDB 82.0634% -84 - C1 -2Z4R 8.1 DNAA_THEMA
21 PsiBlast_CBE 81.6234% -84 - C1 -2Z4R 5.9 DNAA_THEMA
38 HHSearch 80.9332% -85 - C1 -2Z4S 6.8 DNAA_THEMA
2 PsiBlast_PDB 80.8034% -84 - C1 -2Z4S 6.8 DNAA_THEMA
37 Fugue 66.5317% -57 * C1 *2CE7 - FTSH_THEMA -
52 HHSearch 66.2618% -88 - C1 -3D8B - FIGL1_HUMAN -
51 HHSearch 63.2622% -82 - C1 -2CE7 - FTSH_THEMA -
47 HHSearch 63.2124% -84 - C1 -3VFD - SPAST_HUMAN -
53 HHSearch 60.4016% -91 - C1 -3EIE - VPS4_YEAST -
44 HHSearch 60.0021% -73 - C1 -1IY2 - FTSH_THET8 -
43 HHSearch 59.7219% -85 - C1 -3PFI - ? -
54 HHSearch 59.6115% -93 - C1 -1SXJ - RFC3_YEAST -