@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs0782: (2015-12-03 )
MAKEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLARRLPTSVNQPKDYASIDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMPQTREHILLSRQVGVKHLIVFMNKVDLVDDEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDEKYEDIIMELMSTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGTVRVNDEVEIVGIKEDIQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVLAKPGSINPHTKFKGEVYILSKEEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEMVMPGDNVTIEVELIHPIAVEQGTTFSIREGGRTVGSGIVSEIEA

Atome Classification :

(48 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_A_2(4LBW)
EFTU1_THETH
[Raw transfer]




GDP_H_6(1DG1)
EFTU2_ECOLI
[Raw transfer]




GNP_A_2(4LBV)
EFTU1_THETH
[Raw transfer]




GNP_A_2(4LBZ)
EFTU1_THETH
[Raw transfer]




GNP_A_3(1EXM)
EFTU1_THETH
[Raw transfer]




GNP_P_9(1B23)
EFTU_THEAQ
[Raw transfer]




GNP_A_3(2C77)
EFTU2_THET8
[Raw transfer]




GTP_A_3(3VMF)
EF1A_AERPE
[Raw transfer]




GNP_A_2(4H9G)
EFTU1_THETH
[Raw transfer]




GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]




GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]




GNP_A_3(1EFT)
EFTU_THEAQ
[Raw transfer]




GNP_A_2(4LC0)
EFTU1_THETH
[Raw transfer]




GNP_A_2(4LBY)
EFTU1_THETH
[Raw transfer]




GNP_A_5(1OB2)
EFTU2_ECOLI
[Raw transfer]




GDP_A_3(1HA3)
EFTU1_THET8
[Raw transfer]




GDP_A_3(3U2Q)
?
[Raw transfer]




GDP_B_6(1EFC)
EFTU1_ECOLI
[Raw transfer]




GNP_A_3(2BVN)
EFTU2_ECOLI
[Raw transfer]




GNP_B_6(2BVN)
EFTU2_ECOLI
[Raw transfer]




GDP_A_5(1EFC)
EFTU1_ECOLI
[Raw transfer]




GDP_A_6(1D8T)
EFTU1_ECOLI
[Raw transfer]




GDP_A_5(3U6K)
EFTU1_ECOLI
[Raw transfer]




GDP_A_4(4G5G)
EFTU1_ECOLI
[Raw transfer]




GDP_B_7(1HA3)
EFTU1_THET8
[Raw transfer]




GDP_B_(1D8T)
EFTU1_ECOLI
[Raw transfer]




GDP_G_5(1DG1)
EFTU2_ECOLI
[Raw transfer]




GDP_A_3(2FX3)
EFTU1_ECOLI
[Raw transfer]




GDP_B_7(3U6K)
?
[Raw transfer]




GDP_A_7(1TUI)
EFTU_THEAQ
[Raw transfer]




GDP_B_8(1TUI)
EFTU_THEAQ
[Raw transfer]




GDP_K_10(4IW3)
EFTU1_PSEPK
[Raw transfer]




GDP_C_9(1TUI)
EFTU_THEAQ
[Raw transfer]




GNP_A_3(4PC7)
EFTU1_ECOLI
[Raw transfer]




GDP_A_3(1ETU)
EFTU1_ECOLI
[Raw transfer]




GDP_B_6(3WY9)
EF1A_PYRHO
[Raw transfer]




GDP_A_5(3WY9)
EF1A_PYRHO
[Raw transfer]




GDP_B_7(4IW3)
EFTU1_PSEPK
[Raw transfer]




GNP_A_4(1KK1)
IF2G_PYRAB
[Raw transfer]




GNP_C_3(2P8W)

[Raw transfer]




34 PsiBlast_CBE 97.6273%-103 - C3 -4PC3 - EFTU1_ECOLI -
35 PsiBlast_CBE 96.7473%-100 - C3 -4PC2 - ? -
36 PsiBlast_CBE 96.2773%-108 - C3 -4PC1 - ? -
43 PsiBlast_CBE 96.0773%-107 - C3 -4Q7J - EFTU1_ECOLI -
30 PsiBlast_CBE 95.7073% -94 - C3 -1DG1 8.4 EFTU2_ECOLI
33 PsiBlast_CBE 95.2273%-105 - C3 -4PC6 - ? -
47 PsiBlast_CBE 95.2073% -89 - C3 -1D8T 8.7 EFTU1_ECOLI
40 PsiBlast_CBE 95.1773% -90 - C3 -1EFC 8.5 EFTU1_ECOLI
46 PsiBlast_CBE 95.1573% -92 - C3 -1D8T 8.9 EFTU1_ECOLI
32 PsiBlast_CBE 95.1273%-101 - C3 -4PC6 - ? -
42 PsiBlast_CBE 95.0573%-109 - C3 -4Q7J - ? -
41 PsiBlast_CBE 95.0573% -90 - C3 -1EFC 8.8 EFTU1_ECOLI
18 PsiBlast_PDB 94.9673% -92 - C3 -3U6K 7.4 EFTU1_ECOLI
20 PsiBlast_PDB 94.9273% -86 - C3 -4G5G 8.6 EFTU1_ECOLI
29 PsiBlast_CBE 94.8073% -90 - C3 -1DG1 7.4 EFTU2_ECOLI
113 HHSearch 94.7473%-106 - C3 -3AVX - EFTU2_ECOLI (first) -
28 PsiBlast_CBE 94.4973% -87 - C3 -3U6K 6.9 ?
51 PsiBlast_CBE 94.1568%-104 - C3 -4IW3 7.6 EFTU1_PSEPK
19 PsiBlast_PDB 94.1073% -89 - C3 -3U2Q 7.3 ?
111 HHSearch 93.9572% -89 - C3 -2C78 9.5 EFTU1_THET8
14 PsiBlast_PDB 93.8370% -88 - C3 -4LBW 9.7 EFTU1_THETH
13 PsiBlast_PDB 93.7570% -86 - C3 -4LBV 9.6 EFTU1_THETH
2 PsiBlast_PDB 93.6570% -87 - C3 -4H9G 9.6 EFTU1_THETH
4 PsiBlast_PDB 93.5570% -88 - C3 -1EXM 9.6 EFTU1_THETH
16 PsiBlast_PDB 93.5470% -84 - C3 -4LBZ 9.6 EFTU1_THETH
1 PsiBlast_PDB 93.5170% -90 - C3 -2C78 9.5 EFTU1_THET8
17 PsiBlast_PDB 93.4470% -87 - C3 -4LC0 9.7 EFTU1_THETH
44 PsiBlast_CBE 93.3873% -90 - C3 -2FX3 7.0 EFTU1_ECOLI
39 PsiBlast_CBE 93.3373% -94 - C3 -2BVN 8.7 EFTU2_ECOLI
12 PsiBlast_PDB 93.1670% -88 - C3 -1EFT 9.2 EFTU_THEAQ
15 PsiBlast_PDB 93.0970% -87 - C3 -4LBY 9.5 EFTU1_THETH
38 PsiBlast_CBE 93.0573% -93 - C3 -2BVN 9.1 EFTU2_ECOLI
52 PsiBlast_CBE 92.9968% -98 - C3 -4IW3 6.5 EFTU1_PSEPK
3 PsiBlast_PDB 92.5470% -89 - C3 -2C77 9.7 EFTU2_THET8
21 PsiBlast_CBE 91.7870%-101 - C3 -1HA3 8.3 EFTU1_THET8
8 PsiBlast_PDB 91.4470% -94 - C3 -1TUI 6.6 EFTU_THEAQ
22 PsiBlast_CBE 91.3170% -92 - C3 -1TUI 6.1 EFTU_THEAQ
9 PsiBlast_PDB 91.2470% -85 - C3 -1B23 8.6 EFTU_THEAQ
37 PsiBlast_CBE 90.9073% -83 * C3 *1OB2 6.7 EFTU2_ECOLI
5 PsiBlast_PDB 90.7070% -91 - C3 -1HA3 9.2 EFTU1_THET8
23 PsiBlast_CBE 90.6170% -92 - C3 -1TUI 6.8 EFTU_THEAQ
31 PsiBlast_CBE 89.0073% -98 - C3 -4PC7 7.7 EFTU1_ECOLI
67 PsiBlast_CBE 73.3035% -81 - C3 -3WY9 7.9 EF1A_PYRHO
66 PsiBlast_CBE 71.7235% -78 - C3 -3WY9 7.8 EF1A_PYRHO
70 PsiBlast_CBE 67.6332% -56 - C3 -3VMF 7.6 EF1A_AERPE
45 PsiBlast_CBE 64.9573%-111 - C3 -1ETU 4.8 EFTU1_ECOLI
103 Fugue 63.1932% -65 - C3 -1KK1 8.0 IF2G_PYRAB
110 Fugue 9.2160% 186 - C3 -2P8W 3.1