@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1108: (2015-12-05 )
MNYAQLIKHYGQLLEACGEEVENFIYVLKDLKQWSTTDYLLNQNSSVSDTDQQLMENIFQQLKKHRSPQYITGKAYFRDLIFFVDERVLIPRPETEELVDLILSENKVEDCSVLDIGTGSGAIAISLKKERPSWDVLASDISVSALDLAKENANNCDAEVTFIESDVFSNISGKFDIIVSNPPYISYNDKDEVGKNVLASEPHSALFADEEGLAIYRKIIENSREYLQPRGKLYFEIGYKQGDDLRSLLKRYFPNNRCRVLKDIFGKDRMVVLDNE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GLN_A_7(1SG9)
PRMC_THEMA
[Raw transfer]



SAM_A_3(1NV8)
PRMC_THEMA
[Raw transfer]



SAM_A_3(1NV8)
PRMC_THEMA
[Raw transfer]



SAM_A_4(1SG9)
PRMC_THEMA
[Raw transfer]



SAH_B_2(1NV9)
PRMC_THEMA
[Raw transfer]



GLN_B_8(1SG9)
PRMC_THEMA
[Raw transfer]



SAM_A_3(1VQ1)
PRMC_THEMA
[Raw transfer]



SAM_B_5(1SG9)
PRMC_THEMA
[Raw transfer]



SAH_B_2(1NV9)
PRMC_THEMA
[Raw transfer]



SAH_C_3(2B3T)
PRMC_ECOLI
[Raw transfer]



SAH_B_2(1T43)
PRMC_ECOLI
[Raw transfer]



SAM_C_6(1SG9)
PRMC_THEMA
[Raw transfer]



MEQ_A_5(1NV8)
PRMC_THEMA
[Raw transfer]
2 PsiBlast_PDB 93.9532% -71 - C1 -2B3T - PRMC_ECOLI -
61 HHSearch 93.4530% -66 - C1 -2B3T 5.3 PRMC_ECOLI
62 HHSearch 90.6831% -87 - C1 -1NV8 7.3 PRMC_THEMA
1 PsiBlast_PDB 88.4032% -58 - C1 -1T43 - PRMC_ECOLI -
52 Fugue 88.2530% -82 - C1 -1NV9 6.1 PRMC_THEMA
51 Fugue 87.0230% -55 - C1 -1T43 6.0 PRMC_ECOLI
22 PsiBlast_CBE 84.1233% -72 - C1 -1SG9 7.7 PRMC_THEMA
4 PsiBlast_PDB 83.6633% -72 - C1 -1NV8 7.3 PRMC_THEMA
21 PsiBlast_CBE 83.4233% -72 - C1 -1SG9 7.6 PRMC_THEMA
6 PsiBlast_PDB 83.1733% -71 - C1 -1SG9 7.1 PRMC_THEMA
7 PsiBlast_PDB 83.0833% -72 - C1 -1VQ1 6.8 PRMC_THEMA
5 PsiBlast_PDB 82.1633% -76 - C1 -1NV9 6.1 PRMC_THEMA
3 PsiBlast_PDB 77.2533% -93 - C1 -4DZR - ? -
59 Fugue 57.0718% -43 - C1 -1UFK - PRMA_THET8 -
74 HHSearch 56.2125% -48 - C1 -2NXC - PRMA_THET8 -
53 Fugue 54.7117% -38 - C1 -2H00 - MET16_HUMAN -
76 HHSearch 53.6319% -61 - C1 -2F8L - ? -
72 HHSearch 53.3025% -56 - C1 -3TMA - ? -
73 HHSearch 52.9622% -63 - C1 -3TM4 - ? -
65 HHSearch 52.7722% -44 - C1 -3Q87 - ? -