@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1395: (2015-12-07 )
MDGKSISVKSYANIAIIKYWGKADAEKMIPATSSISLTLENMYTETRLTTLGKDAKKDEFYISGVLQNDHEHDKMSAILDRFRQNKSGFVKIETTNNMPTAAGLSSSSSGLSALVKACNDFFGTNLSQSQLAQEAKFASGSSSRSFFGPVAAWDKDSGDIYKVHTDLDLAMIMLVLNDKRKPISSREGMKICTETSTTFNEWVRQSEQDYQDMLVYLKNNDFQKVGQLTERNALAMHSTTKTATPAFSYLTEETYKAMDVVKKLREKGHECYYTMDAGPNVKVLCLRQDLEALAAILEKDYRIIVSTTKELADG

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DP6_A_3(4DU7)
?
[Raw transfer]



FM0_A_3(3QT7)
?
[Raw transfer]



2P0_A_3(3QT6)
?
[Raw transfer]



FM0_B_4(3QT7)
?
[Raw transfer]



2P0_B_4(3QT6)
?
[Raw transfer]



2P0_A_3(4DPY)
?
[Raw transfer]



2P0_B_7(4DU8)
?
[Raw transfer]



FM0_B_4(4DPT)
?
[Raw transfer]



2P0_A_3(4DU8)
?
[Raw transfer]



2P0_B_4(4DPY)
?
[Raw transfer]



DP6_B_4(4DU7)
?
[Raw transfer]



GOL_A_4(4DPX)
?
[Raw transfer]



GOL_A_5(4Z7C)
?
[Raw transfer]



EDO_A_10(2GS8)
?
[Raw transfer]



EDO_A_6(2GS8)
?
[Raw transfer]
1 PsiBlast_PDB 99.7967% -83 - C1 -2GS8 3.0 ?
45 HHSearch 96.4368% -71 - C1 -2GS8 2.2 ?
4 PsiBlast_PDB 86.7339% -61 - C1 -3QT5 - ? -
12 PsiBlast_PDB 86.3939% -59 - C1 -4DPY 7.1 ?
8 PsiBlast_PDB 85.4639% -61 - C1 -4DU7 7.3 ?
10 PsiBlast_PDB 85.4139% -58 - C1 -4DPU - ? -
26 PsiBlast_CBE 85.3439% -58 - C1 -4DPX - ? -
49 HHSearch 85.1737% -59 * C1 *3QT5 - ? -
6 PsiBlast_PDB 85.1639% -60 - C1 -3QT7 7.8 ?
14 PsiBlast_PDB 85.0139% -60 - C1 -4DU8 7.2 ?
29 PsiBlast_CBE 84.9139% -56 - C1 -4DU8 6.9 ?
23 PsiBlast_CBE 84.4839% -59 - C1 -3QT7 7.6 ?
27 PsiBlast_CBE 84.4739% -57 - C1 -4DPU - ? -
11 PsiBlast_PDB 84.4639% -58 - C1 -4DPX 2.0 ?
5 PsiBlast_PDB 84.4139% -57 - C1 -3QT6 7.1 ?
7 PsiBlast_PDB 84.2639% -58 - C1 -4DPT - ? -
24 PsiBlast_CBE 84.1539% -56 - C1 -3QT6 7.0 ?
9 PsiBlast_PDB 84.1139% -61 - C1 -3QT8 - ? -
21 PsiBlast_CBE 84.0739% -57 - C1 -4DU7 6.7 ?
47 HHSearch 83.4926% -60 - C1 -2HKE - ? -
25 PsiBlast_CBE 83.4739% -55 - C1 -4DPY 7.4 ?
22 PsiBlast_CBE 81.5439% -55 - C1 -4DPT 6.5 ?
15 PsiBlast_PDB 81.3630% -50 - C1 -4Z7C 2.4 ?