@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : gbs1811: (2015-12-10 )
MVVKVGINGFGRIGRLAFRRIQNVEGVEVTRINDLTDPNMLAHLLKYDTTQGRFDGTVEVKEGGFEVNGQFVKVSAEREPANIDWATDGVEIVLEATGFFASKEKAEQHIHENGAKKVVITAPGGNDVKTVVFNTNHDILDGTETVISGASCTTNCLAPMAKALQDNFGVKQGLMTTIHAYTGDQMILDGPHRGGDLRRARAGAANIVPNSTGAAKAIGLVIPELNGKLDGAAQRVPVPTGSVTELVATLEKDVTVEEVNAAMKAAANDSYGYTEDPIVSSDIVGISYGSLFDATQTKVQTVDGNQLVKVVSWYDNEMSYTSQLVRTLEYFAKIAK

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]




NDP_O_12(1RM4)
G3PA_SPIOL
[Raw transfer]




NAD_Q_15(1HDG)
G3P_THEMA
[Raw transfer]




NAD_O_13(1HDG)
G3P_THEMA
[Raw transfer]




NAD_A_3(2EP7)
G3P_AQUAE
[Raw transfer]




NAD_O_3(3H9E)
G3PT_HUMAN
[Raw transfer]




NAD_A_3(3CPS)
?
[Raw transfer]




NAD_A_3(3PYM)
G3P3_YEAST
[Raw transfer]




23 PsiBlast_CBE 98.26100% -88 - C1 -4QX6 - ? -
22 PsiBlast_CBE 97.95100% -88 - C1 -4QX6 - ? -
21 PsiBlast_CBE 97.36100% -87 - C1 -4QX6 - ? -
38 PsiBlast_CBE 85.6168% -81 - C1 -3LVF - G3P1_STAAR -
44 PsiBlast_CBE 85.4868% -83 - C1 -3LC1 - G3P1_STAAR -
59 PsiBlast_CBE 84.9868% -81 - C1 -3KSZ - G3P1_STAAR -
55 PsiBlast_CBE 84.7868% -80 - C1 -3K9Q - G3P1_STAAR -
40 PsiBlast_CBE 84.6068% -81 - C1 -3LVF - G3P1_STAAR -
7 PsiBlast_PDB 84.5768% -81 - C1 -3LC1 - G3P1_STAAR -
4 PsiBlast_PDB 84.5268% -79 - C1 -3LVF - G3P1_STAAR -
42 PsiBlast_CBE 84.5068% -81 - C1 -3LC1 - G3P1_STAAR -
58 PsiBlast_CBE 84.4868% -81 - C1 -3KSZ - G3P1_STAAR -
2 PsiBlast_PDB 84.4168% -78 - C1 -3L6O - G3P1_STAAR -
49 PsiBlast_CBE 84.3768% -80 - C1 -3HQ4 - G3P1_STAAR -
56 PsiBlast_CBE 84.3668% -80 - C1 -3K9Q - G3P1_STAAR -
30 PsiBlast_CBE 84.3568% -78 - C1 -3K73 - G3P1_STAAR -
34 PsiBlast_CBE 84.3468% -80 - C1 -3VAZ - G3P1_STAAR -
8 PsiBlast_PDB 84.2668% -82 - C1 -3HQ4 - G3P1_STAAR -
110 HHSearch 84.2269% -77 - C1 -3LVF - G3P1_STAAR -
10 PsiBlast_PDB 84.1868% -81 - C1 -3K9Q - G3P1_STAAR -
106 HHSearch 77.6854% -75 - C1 -1HDG 9.2 G3P_THEMA
103 HHSearch 77.4446% -76 - C1 -1RM4 8.5 G3PA_SPIOL
17 PsiBlast_PDB 77.0352% -74 - C1 -1HDG 9.2 G3P_THEMA
112 HHSearch 76.0653% -72 - C1 -2EP7 9.2 G3P_AQUAE
72 PsiBlast_CBE 75.6752% -75 - C1 -1HDG 9.5 G3P_THEMA
111 HHSearch 75.1846% -77 - C1 -3PYM 8.5 G3P3_YEAST
108 HHSearch 74.5247% -78 - C1 -3CPS 9.2 ?
115 HHSearch 71.8644% -73 - C1 -3H9E 9.1 G3PT_HUMAN