@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu01660: (2016-06-03 )
MRPVFPLILSAVLFLSCFFGARQTEASASKRAIDANQIVNRMSLDEKLGQMLMPDFRNWQKEGESSPQALTKMNDEVASLVKKYQFGGIILFAENVKTTKQTVQLTDDYQKASPKIPLMLSIDQEGGIVTRLGEGTNFPGNMALGAARSRINAYQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQDIASALKHFPGHGDTDVDSHYGLPLVSHGQERLREVELYPFQKAIDAGADMVMTAHVQFPAFDDTTYKSKLDGSDILVPATLSKKVMTGLLRQEMGFNGVIVTDALNMKAIADHFGQEEAVVMAVKAGVDIALMPASVTSLKEEQKFARVIQALKEAVKNGDIPEQQINNSVERIISLKIKRGMYPARNSDSTKEKIAKAKKIVGSKQHLKAEKKLAEKAVTVLKNEQHTLPFKPKKGSRILIVAPYEEQTASIEQTIHDLIKRKKIKPVSLSKMNFASQVFKTEHEKQVKEADYIITGSYVVKNDPVVNDGVIDDTISDSSKWATVFPRAVMKAALQHNKPFVLMSLRNPYDAANFEEAKALIAVYGFKGYANGRYLQPNIPAGVMAIFGQAKPKGTLPVDIPSVTKPGNTLYPLGYGLNIKTGRPL

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAG_A_3(4GNV)
?
[Raw transfer]



NDG_A_3(4GVF)
NAGZ_SALTY
[Raw transfer]



NAG_B_2(1Y65)
NAGZ_VIBCH
[Raw transfer]



1BW_A_3(4HZM)
NAGZ_SALTY
[Raw transfer]



VPU_A_2(3GSM)
NAGZ_VIBCH
[Raw transfer]



BA4_A_2(3GS6)
NAGZ_VIBCH
[Raw transfer]



0XY_A_3(4GVH)
NAGZ_SALTY
[Raw transfer]



OAN_A_2(2OXN)
NAGZ_VIBCH
[Raw transfer]



OAN_A_2(2OXN)
NAGZ_VIBCH
[Raw transfer]



GOL_A_3(5BU9)
?
[Raw transfer]



MUB_B_6(4GYJ)
NAGZ_BACSU
[Raw transfer]



SUGAR_B_4(4GYK)
NAGZ_BACSU
[Raw transfer]
-
MUB_A_4(4GYJ)
NAGZ_BACSU
[Raw transfer]



SUGAR_A_3(4GYK)
NAGZ_BACSU
[Raw transfer]
-
FMT_A_7(4YYF)
?
[Raw transfer]



ACY_A_3(3SQL)
?
[Raw transfer]



ACY_A_9(3SQL)
?
[Raw transfer]
4 PsiBlast_PDB 99.2399% -80 - C1 -4GYK 3.7 NAGZ_BACSU
23 PsiBlast_CBE 98.8999% -81 - C1 -4GYK 3.6 NAGZ_BACSU
52 Fugue 98.61100% -76 - C1 -3BMX - NAGZ_BACSU -
22 PsiBlast_CBE 98.61100% -75 - C1 -3BMX - NAGZ_BACSU -
1 PsiBlast_PDB 98.61100% -76 - C1 -3BMX - NAGZ_BACSU -
3 PsiBlast_PDB 98.4199% -76 - C1 -4GYJ 3.6 NAGZ_BACSU
31 HHSearch 98.36100% -77 - C1 -3BMX - NAGZ_BACSU -
21 PsiBlast_CBE 98.36100% -78 - C1 -3NVD - NAGZ_BACSU -
24 PsiBlast_CBE 98.0499% -76 - C1 -4GYJ 3.4 NAGZ_BACSU
2 PsiBlast_PDB 97.94100% -76 - C1 -3NVD - NAGZ_BACSU -
26 PsiBlast_CBE 97.3899% -78 - C1 -3LK6 - NAGZ_BACSU -
5 PsiBlast_PDB 97.0799% -78 - C1 -3LK6 - NAGZ_BACSU -
25 PsiBlast_CBE 97.0499% -77 - C1 -3LK6 - NAGZ_BACSU -
27 PsiBlast_CBE 96.7799% -78 - C1 -3LK6 - NAGZ_BACSU -
55 Fugue 74.8733% -65 - C1 -4ZM6 - ? -
6 PsiBlast_PDB 72.5131% -67 - C1 -4ZM6 - ? -
28 PsiBlast_CBE 71.9231% -64 - C1 -4ZM6 - ? -
36 HHSearch 71.8734% -65 - C1 -4ZM6 - ? -
34 HHSearch 65.0625% -50 - C1 -3U48 - ? -
33 HHSearch 63.7122% -47 - C1 -3RRX - ? -
7 PsiBlast_PDB 51.1339% -56 - C1 -3SQL 3.5 ?
20 PsiBlast_PDB 48.1830% -53 - C1 -4GNV 4.1 ?
11 PsiBlast_PDB 45.4930% -49 - C1 -1Y65 3.7 NAGZ_VIBCH
51 HHSearch 44.8130% -50 - C1 -2OXN 4.0 NAGZ_VIBCH
12 PsiBlast_PDB 43.8430% -46 - C1 -2OXN 3.8 NAGZ_VIBCH