@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu23580: (2016-07-06 )
MKKLLMLTTGGTIASVEGENGLAPGVKADELLSYVSKLDNDYTMETQSLMNIDSTNMQPEYWVEIAEAVKENYDAYDGFVITHGTDTMAYTSAALSYMLQHAKKPIVITGSQIPITFQKTDAKKNITDAIRFACEGVGGVYVVFDGRVIQGTRAIKLRTKSYDAFESINYPYIAFINEDGIEYNKQVTEPENDTFTVDTSLCTDVCLLKLHPGLKPEMFDALKSMYKGIVIESYGSGGVPFEGRDILSKVNELIESGIVVVITTQCLEEGEDMSIYEVGRRVNQDLIIRSRNMNTEAIVPKLMWALGQSSDLPVVKRIMETPIADDVVL

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FLC_A_3(4RA9)
?
[Raw transfer]



FLC_A_3(4RA9)
?
[Raw transfer]



ASP_B_13(2P2N)
ASPG1_ECOLI
[Raw transfer]



ASP_C_18(2P2N)
ASPG1_ECOLI
[Raw transfer]



ASP_A_9(2P2N)
ASPG1_ECOLI
[Raw transfer]



GOL_A_6(4RA9)
?
[Raw transfer]



EDO_C_3(1WNF)
?
[Raw transfer]



EDO_D_4(1WNF)
?
[Raw transfer]



ASP_A_3(4NJE)
?
[Raw transfer]
3 PsiBlast_PDB 82.7538% -87 - C9 -1WLS - ? -
2 PsiBlast_PDB 82.3040% -86 - C9 -1WNF 3.2 ?
38 HHSearch 82.1042% -80 - C9 -4Q0M - ? -
21 PsiBlast_CBE 81.9840% -90 - C9 -1WNF - ? -
1 PsiBlast_PDB 81.5442% -85 - C9 -4Q0M - ? -
36 HHSearch 74.2734% -5 - C9 -2D6F - GATD_METTH -
37 HHSearch 73.7335% 9 - C9 -1ZQ1 - GATD_PYRAB -
10 PsiBlast_PDB 73.5533% 3 - C9 -2D6F - GATD_METTH -
11 PsiBlast_PDB 72.7332% 13 - C9 -1ZQ1 - GATD_PYRAB -
26 PsiBlast_CBE 72.6732% 17 - C9 -2P2D - ASPG1_ECOLI -
27 PsiBlast_CBE 72.2332% 17 - C9 -2P2D - ASPG1_ECOLI -
9 PsiBlast_PDB 71.9332% 14 - C9 -2HIM - ASPG1_ECOLI -
29 PsiBlast_CBE 71.8432% 17 - C9 -2HIM - ASPG1_ECOLI -
40 HHSearch 71.7931% -5 - C9 -2HIM - ASPG1_ECOLI -
25 PsiBlast_CBE 71.5832% 15 - C9 -2P2D - ASPG1_ECOLI -
7 PsiBlast_PDB 71.0632% 16 - C9 -2P2D - ASPG1_ECOLI -
30 PsiBlast_CBE 71.0332% -5 - C9 -2HIM - ASPG1_ECOLI -
28 PsiBlast_CBE 70.1632% 13 - C9 -2HIM - ASPG1_ECOLI -
48 HHSearch 69.7028% -2 - C9 -5DNC - ? -
23 PsiBlast_CBE 69.5732% -3 - C9 -2P2N 2.2 ASPG1_ECOLI
24 PsiBlast_CBE 69.1332% -1 - C9 -2P2N 3.0 ASPG1_ECOLI
8 PsiBlast_PDB 65.6632% -0 - C9 -2P2N 2.0 ASPG1_ECOLI
6 PsiBlast_PDB 60.0149%-131 - C9 -4RA9 4.1 ?
4 PsiBlast_PDB 59.4049%-130 - C9 -4NJE 4.8 ?
49 HHSearch 57.4647%-133 - C9 -4RA9 4.1 ?