@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu31540: (2016-07-22 )
MNKRKIGLAMSLVIAAGTILGACGNSEKSSGSGEGKNKFSVAMVTDVGGVDDKSFNQSAWEGIQAFGKENGLKKGKNGYDYLQSKSDADYTTNLNKLARENFDLIYGVGYLMEDSISEIADQRKNTNFAIIDAVVDKDNVASITFKEQEGSFLVGVAAALSSKSGKIGFVGGMESELIKKFEVGFRAGVQAVNPKAVVEVKYAGGFDKADVGKATAESMYKSGVDVIYHSAGATGTGVFTEAKNLKKEDPKRDVWVIGVDKDQYAEGQVEGTDDNVTLTSMVKKVDTVVEDVTKKASDGKFPGGETLTYGLDQDGVGISPSKQNLSDDVIKAVDKWKKKIIDGLEIPATEKELKTFKAE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GMP_A_2(2FQX)
TMPC_TREPA
[Raw transfer]



GMP_A_2(2FQX)
TMPC_TREPA
[Raw transfer]



GMP_A_2(2FQX)
TMPC_TREPA
[Raw transfer]



NOS_A_2(2FQW)
TMPC_TREPA
[Raw transfer]



ADN_A_2(2FQY)
TMPC_TREPA
[Raw transfer]



ADN_A_4(4PEV)
?
[Raw transfer]



ADN_A_4(4PEV)
?
[Raw transfer]
24 Fugue 89.0443% 5 - C2 -2FQX 6.5 TMPC_TREPA
1 PsiBlast_PDB 86.9144% -4 - C2 -2FQW 6.2 TMPC_TREPA
2 PsiBlast_PDB 86.8444% 2 - C2 -2FQX 6.5 TMPC_TREPA
3 PsiBlast_PDB 86.1644% -0 - C2 -2FQY 6.6 TMPC_TREPA
34 HHSearch 83.2844% 44 - C2 -2FQX 6.5 TMPC_TREPA
36 HHSearch 80.0233% 12 - C2 -4PEV 5.9 ?
37 HHSearch 68.3721% 12 - C2 -4IIL - TPN38_TREPA -
25 Fugue 67.8420% -12 - C2 -4IIL - TPN38_TREPA -
4 PsiBlast_PDB 63.2432% -3 - C2 -4PEV 5.9 ?
6 PsiBlast_PDB 60.0923% 4 - C2 -3S99 - PBP_BRUA2 -
39 HHSearch 59.1221% 14 - C2 -3S99 - PBP_BRUA2 -
27 Fugue 57.7721% 23 - C2 -3S99 - PBP_BRUA2 -
35 HHSearch 57.3622% 31 - C2 -2HQB - ? -
7 PsiBlast_PDB 51.6925% -80 - C2 -4YCS - ? -
5 PsiBlast_PDB 49.6226% 23 - C2 -4IIL - TPN38_TREPA -
51 HHSearch 45.9014% 1 - C2 -3DBI - ASCG_ECOLI -
48 HHSearch 45.7714% 9 - C2 -1QPZ - PURR_ECOLI -
45 HHSearch 44.2214% 17 - C2 -4KZK - ? -
46 HHSearch 42.9214% 7 - C2 -2O20 - ? -
8 PsiBlast_PDB 42.5829% -52 - C2 -4P98 - ? -