@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu35960: (2016-07-30 )
MKKAVSVILTLSLFLLTACSLEPPQWAKPSNSGNKKEFTIGLSVSTLNNPFFVSLKKGIEKEAKKRGMKVIIVDAQNDSSKQTSDVEDLIQQGVDALLINPTDSSAISTAVESANAVGVPVVTIDRSAEQGKVETLVASDNVKGGEMAAAFIADKLGKGAKVAELEGVPGASATRERGSGFHNIADQKLQVVTKQSADFDRTKGLTVMENLLQGHPDIQAVFAHNDEMALGALEAINSSGKDILVIGFDGNKDALASIKDRKLSATVAQQPELIGKLATEAADDILHGKKVQKTISAPLKLETQK

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RIP_A_2(2GX6)
RBSB_ECOLI
[Raw transfer]



RIP_A_3(2IOY)
?
[Raw transfer]



RIP_A_3(2IOY)
?
[Raw transfer]



RIP_B_4(2IOY)
?
[Raw transfer]



RIP_A_2(4ZJP)
?
[Raw transfer]



RIP_A_2(2FN8)
?
[Raw transfer]



RIP_B_2(2DRI)
RBSB_ECOLI
[Raw transfer]



RIP_B_2(1DBP)
RBSB_ECOLI
[Raw transfer]



RIP_B_2(1DRK)
RBSB_ECOLI
[Raw transfer]



RIP_B_2(2DRI)
RBSB_ECOLI
[Raw transfer]



RIP_B_2(1DRJ)
RBSB_ECOLI
[Raw transfer]



GZL_A_2(2VK2)
YTFQ_ECOLI
[Raw transfer]



GOL_A_2(4YV7)
?
[Raw transfer]



GOL_A_2(4YV7)
?
[Raw transfer]



RIP_A_2(4RY0)
?
[Raw transfer]
3 PsiBlast_PDB 86.8054% -12 - C1 -1URP - RBSB_ECOLI -
5 PsiBlast_PDB 86.5554% -7 - C1 -2GX6 5.7 RBSB_ECOLI
2 PsiBlast_PDB 86.2756% -0 - C1 -4ZJP 6.0 ?
4 PsiBlast_PDB 83.4954% 1 - C1 -2DRI 5.9 RBSB_ECOLI
6 PsiBlast_PDB 83.3754% -4 - C1 -1DBP 5.6 RBSB_ECOLI
51 HHSearch 83.0259% 9 * C1 *2IOY 5.6 ?
9 PsiBlast_PDB 82.6053% 3 - C1 -1DRK 5.8 RBSB_ECOLI
8 PsiBlast_PDB 82.6053% 1 - C1 -1DRJ 5.1 RBSB_ECOLI
21 PsiBlast_CBE 82.3559% 8 - C1 -2IOY 5.9 ?
1 PsiBlast_PDB 82.3159% 5 - C1 -2IOY 5.6 ?
35 HHSearch 81.7853% 21 - C1 -2DRI 5.9 RBSB_ECOLI
7 PsiBlast_PDB 80.4153% -10 - C1 -1BA2 - RBSB_ECOLI -
40 HHSearch 77.6827% -14 - C1 -3L6U - ? -
10 PsiBlast_PDB 76.7937% -31 - C1 -2FN9 - ? -
32 HHSearch 72.4232% 13 - C1 -4YV7 3.3 ?
12 PsiBlast_PDB 72.1433% 12 - C1 -4YV7 3.3 ?
46 HHSearch 69.1327% 3 - C1 -4KQ9 - ? -
30 PsiBlast_CBE 68.7135% 11 - C1 -4RY9 - ? -
11 PsiBlast_PDB 68.0137% -11 - C1 -2FN8 5.7 ?
29 PsiBlast_CBE 67.7235% 11 - C1 -4RY9 - ? -
31 PsiBlast_CBE 54.4232% 22 - C1 -4RY0 6.0 ?
18 PsiBlast_PDB 54.1232% 22 - C1 -2VK2 3.4 YTFQ_ECOLI