@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : bsu39670: (2016-08-06 )
MAFVSMKELLEDAKREQYAIGQFNINGLQWTKAILQAAQKEQSPVIAAASDRLVDYLGGFKTIAAMVGALIEDMAITVPVVLHLDHGSSAERCRQAIDAGFSSVMIDGSHQPIDENIAMTKEVTDYAAKHGVSVEAEVGTVGGMEDGLVGGVRYADITECERIVKETNIDALAAALGSVHGKYQGEPNLGFKEMEAISRMTDIPLVLHGASGIPQDQIKKAITLGHAKININTECMVAWTDETRRMFQENSDLYEPRGYLTPGIEAVEETVRSKMREFGSAGKAAKQQVG

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PH4_A_5(3C56)
ALF_HELPY
[Raw transfer]



13P_A_5(2FJK)
ALF_THECA
[Raw transfer]



13P_A_8(3Q94)
?
[Raw transfer]



PGH_A_9(3C52)
ALF_HELPY
[Raw transfer]



PGH_B_6(2ISV)
?
[Raw transfer]



PGH_A_4(2ISW)
?
[Raw transfer]



PGH_A_3(1GVF)
KBAY_ECOLI
[Raw transfer]



PGH_A_5(2ISV)
?
[Raw transfer]



PGH_A_3(1GVF)
KBAY_ECOLI
[Raw transfer]



PGH_B_12(1GVF)
KBAY_ECOLI
[Raw transfer]



FLC_B_6(4TO8)
?
[Raw transfer]



FLC_A_4(4TO8)
?
[Raw transfer]



FLC_A_4(4TO8)
?
[Raw transfer]
2 PsiBlast_PDB 91.4054% -51 - C3 -3Q94 4.4 ?
1 PsiBlast_PDB 87.4756% -55 - C3 -4TO8 3.0 ?
60 HHSearch 87.2656% -53 - C3 -4TO8 3.0 ?
59 HHSearch 85.9737%-113 - C3 -1GVF 3.6 KBAY_ECOLI
21 PsiBlast_CBE 85.3056% -54 - C3 -4TO8 2.9 ?
10 PsiBlast_PDB 80.9935% -66 - C3 -3C52 4.1 ALF_HELPY
37 PsiBlast_CBE 80.6735% -67 - C3 -3C56 - ALF_HELPY -
11 PsiBlast_PDB 80.5335% -66 - C3 -3C56 5.1 ALF_HELPY
31 PsiBlast_CBE 80.3135% -67 - C3 -3N9S - ? -
6 PsiBlast_PDB 80.1639% -58 - C3 -1RV8 - ? -
13 PsiBlast_PDB 80.0735% -61 - C3 -3N9S - ? -
62 HHSearch 79.9442% -40 - C3 -1RVG - ? -
9 PsiBlast_PDB 79.4135% -66 - C3 -3C4U - ALF_HELPY -
38 PsiBlast_CBE 78.9535% -65 - C3 -3C4U - ALF_HELPY -
58 HHSearch 78.7639% -63 * C3 *2ISW 3.8 ?
14 PsiBlast_PDB 78.6839% -54 - C3 -2FJK 4.1 ALF_THECA
4 PsiBlast_PDB 78.6535% -75 - C3 -2ISV 3.4 ?
7 PsiBlast_PDB 78.5739% -59 - C3 -1RVG - ? -
24 PsiBlast_CBE 78.4339% -53 - C3 -1RVG - ? -
25 PsiBlast_CBE 78.2139% -55 - C3 -1RVG - ? -
23 PsiBlast_CBE 77.6735% -62 - C3 -2ISV 4.4 ?
8 PsiBlast_PDB 68.1238% -7 - C3 -1GVF 3.6 KBAY_ECOLI
30 PsiBlast_CBE 67.2338% 2 - C3 -1GVF 3.9 KBAY_ECOLI