@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv0938: (2016-04-27 )
MGSASEQRVTLTNADKVLYPATGTTKSDIFDYYAGVAEVMLGHIAGRPATRKRWPNGVDQPAFFEKQLALSAPPWLSRATVAHRSGTTTYPIIDSATGLAWIAQQAALEVHVPQWRFVAEPGSGELNPGPATRLVFDLDPGEGVMMAQLAEVARAVRDLLADIGLVTFPVTSGSKGLHLYTPLDEPVSSRGATVLAKRVAQRLEQAMPALVTSTMTKSLRAGKVFVDWSQNSGSKTTIAPYSLRGRTHPTVAAPRTWAELDDPALRQLSYDEVLTRIARDGDLLERLDADAPVADRLTRYRRMRDASKTPEPIPTAKPVTGDGNTFVIQEHHARRPHYDFRLECDGVLVSWAVPKNLPDNTSVNHLAIHTEDHPLEYATFEGAIPSGEYGAGKVIIWDSGTYDTEKFHDDPHTGEVIVNLHGGRISGRYALIRTNGDRWLAHRLKNQKDQKVFEFDNLAPMLATHGTVAGLKASQWAFEGKWDGYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQMQNRGRDTRVEFWAFDLLYLDGRALLGTRYQDRRKLLETLANATSLTVPELLPGDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDKHWNTQEVVIGGWRAGEGGRSSGVGSLLMGIPGPGGLQFAGRVGTGLSERELANLKEMLAPLHTDESPFDVPLPARDAKGITYVKPALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVRE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

DTP_A_11(2FAR)
LIGD_PSEAE
[Raw transfer]



ATP_A_11(2FAQ)
LIGD_PSEAE
[Raw transfer]



DGT_B_6(2IRY)
LIGD_MYCTU
[Raw transfer]



NACID_H_10(4MKY)
LIGD_MYCTU
[Raw transfer]
-
NACID_H_10(4MKY)
LIGD_MYCTU
[Raw transfer]
-
NACID_L_12(4MKY)
LIGD_MYCTU
[Raw transfer]
-
NACID_F_4(2R9L)
LIGD_MYCTU
[Raw transfer]
-
NACID_F_4(2R9L)
LIGD_MYCTU
[Raw transfer]
-
NACID_F_4(2R9L)
LIGD_MYCTU
[Raw transfer]
-
NACID_L_12(4MKY)
LIGD_MYCTU
[Raw transfer]
-
NACID_D_4(3PKY)
LIGD_MYCTU
[Raw transfer]
-
NACID_D_4(3PKY)
LIGD_MYCTU
[Raw transfer]
-
3 PsiBlast_PDB 95.97100% -81 - C3 -2IRY - LIGD_MYCTU -
5 PsiBlast_PDB 94.86100% -82 - C3 -3PKY 5.7 LIGD_MYCTU
21 PsiBlast_CBE 94.59100% -80 - C3 -4MKY 4.4 LIGD_MYCTU
26 PsiBlast_CBE 94.47100% -81 - C3 -2IRY 3.1 LIGD_MYCTU
30 HHSearch 94.45100% -79 - C3 -2IRU - LIGD_MYCTU -
1 PsiBlast_PDB 94.45100% -79 - C3 -2IRU - LIGD_MYCTU -
2 PsiBlast_PDB 94.40100% -81 - C3 -2IRX - LIGD_MYCTU -
24 PsiBlast_CBE 94.36100% -82 - C3 -3PKY 3.2 LIGD_MYCTU
6 PsiBlast_PDB 94.28100% -79 - C3 -4MKY 4.8 LIGD_MYCTU
54 Fugue 94.13100% -78 - C3 -2R9L 3.7 LIGD_MYCTU
4 PsiBlast_PDB 94.13100% -78 - C3 -2R9L 3.7 LIGD_MYCTU
22 PsiBlast_CBE 93.74100% -76 - C3 -4MKY 2.8 LIGD_MYCTU
25 PsiBlast_CBE 93.37100% -80 - C3 -2R9L 6.7 LIGD_MYCTU
23 PsiBlast_CBE 91.62100% -79 - C3 -4MKY 2.9 LIGD_MYCTU
9 PsiBlast_PDB 67.2731% -72 - C1 -3RR5 - ? -
31 HHSearch 66.0632% -61 - C3 -5DMU - ? -
39 HHSearch 63.7630% -56 * C1 *2CFM - DNLI_PYRFU -
16 PsiBlast_PDB 63.6631% -67 - C1 -2CFM - DNLI_PYRFU -
27 PsiBlast_CBE 63.5532% -60 - C3 -5DMU - ? -
12 PsiBlast_PDB 62.3130% -61 - C1 -4EQ5 - ? -