@TOME V2.3
(Nov 2016)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv2394: (2016-05-10 )
MSVWLRAGALVAAVMLSLSGCGGFHAGAPSTAGPCEIVPNGTPAPKTPPATVPSSRNLATNPEIATGYRRDMTVVRTAHYAAATANPLATQVACRVLRDGGTAADAVVAAQAVLGLVEPQSSGIGGGGYLVYFDARTGSVQAYDGREVAPAAATENYLRWVSDVDRSAPRPNARASGRSIGVPGILRMLEMVHNEHGRTPWRDLFGPAVTLADGGFDISARMGAAISDAAPQLRDDPEARKYFLNPDGSPKPAGTRLTNPAYSKTLSAIASAGANAFYSGDIAHDIVAAASDTSNGRTPGLLTIEDLAGYLAKRRQPLCTTYRGREICGMPSSGGVAVAATLGILEHFPMSDYAPSKVDLNGGRPTVMGVHLIAEAERLAYADRDQYIADVDFVRLPGGSLTTLVDPGYLAARAALISPQHSMGSARPGDFGAPTAVAPPVPEHGTSHLSVVDSYGNAATLTTTVESSFGSYHLVDGFILNNQLSDFSAEPHATDGSPVANRVEPGKRPRSSMAPTLVFDHSSAGRGALYAVLGSPGGSMIIQFVVKTLVAMLDWGLNPQQAVSLVDFGAANSPHTNLGGENPEINTSDDGDHDPLVQGLRALGHRVNLAEQSSGLSAITRSEAGWAGGADPRREGAVMGDDA

Atome Classification :

(55 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GLU_B_11(4GDX)
GGT1_HUMAN
[Raw transfer]




GLU_B_12(4ZCG)
?
[Raw transfer]




GTB_B_5(2QMC)
?
[Raw transfer]




GLU_D_6(3A75)
?
[Raw transfer]




GTB_D_6(2QMC)
?
[Raw transfer]




GLU_B_5(3A75)
?
[Raw transfer]




GTB_B_5(2QMC)
?
[Raw transfer]




AVN_B_3(3WHS)
GGT_BACSU
[Raw transfer]




GLU_D_6(2QM6)
?
[Raw transfer]




SEE_B_11(4ZC6)
GGT1_HUMAN
[Raw transfer]




GLU_B_7(2DG5)
?
[Raw transfer]




AVN_B_5(3FNM)
?
[Raw transfer]




GLU_B_5(2QM6)
?
[Raw transfer]




GLU_B_11(4GDX)
GGT1_HUMAN
[Raw transfer]




AZS_D_6(2Z8J)
?
[Raw transfer]




AVN_D_6(3FNM)
?
[Raw transfer]




GLU_B_5(2DBW)
?
[Raw transfer]




GLU_B_4(4OTU)
?
[Raw transfer]




AVN_B_5(2Z8K)
GGT_ECOLI
[Raw transfer]




AZS_B_5(2Z8J)
GGT_ECOLI
[Raw transfer]




GLU_B_7(2DBX)
GGT_ECOLI
[Raw transfer]




AVN_D_6(2Z8K)
GGT_ECOLI
[Raw transfer]




GLU_B_7(2DG5)
?
[Raw transfer]




4M8_B_13(4ZBK)
?
[Raw transfer]




AZS_D_6(2Z8I)
?
[Raw transfer]




AZS_B_5(2Z8I)
?
[Raw transfer]




GLU_B_7(2DG5)
?
[Raw transfer]




GLU_B_5(2QM6)
?
[Raw transfer]




AZS_B_5(2Z8J)
GGT_ECOLI
[Raw transfer]




GLU_D_6(2QM6)
?
[Raw transfer]




GLU_B_4(4OTU)
?
[Raw transfer]




AZS_D_6(2Z8J)
?
[Raw transfer]




GLU_S_6(3G9K)
?
[Raw transfer]




GLU_D_6(3A75)
?
[Raw transfer]




GLU_B_11(4GDX)
?
[Raw transfer]




GLU_B_5(3A75)
?
[Raw transfer]




AVN_D_6(2Z8K)
?
[Raw transfer]




GLU_B_11(4GDX)
?
[Raw transfer]




AVN_B_5(2Z8K)
?
[Raw transfer]




AZS_B_5(2Z8I)
?
[Raw transfer]




AVN_B_5(3FNM)
?
[Raw transfer]




AZS_D_6(2Z8I)
?
[Raw transfer]




AVN_B_3(3WHS)
?
[Raw transfer]




AVN_D_6(3FNM)
?
[Raw transfer]




51 HHSearch 96.8134% -67 * C4 *4Y23 - ? -
1 PsiBlast_PDB 93.3732% -59 - C4 -4Y23 - ? -
53 HHSearch 86.7825% -68 - C4 -2NLZ - ? -
73 Fugue 75.0225% -39 - C4 -2I3O - ? -
55 HHSearch 74.6136% -83 - C4 -3WHR - ? -
8 PsiBlast_PDB 73.8434% -78 - C4 -2V36 - GGT_BACSU -
7 PsiBlast_PDB 73.8034% -82 - C4 -3A75 2.7 ?
21 PsiBlast_CBE 73.7934% -80 - C4 -3A75 2.8 ?
5 PsiBlast_PDB 73.5534% -79 - C4 -3WHR - ? -
4 PsiBlast_PDB 73.4634% -81 - C4 -3WHQ - GGT_BACSU -
3 PsiBlast_PDB 73.0133% -71 - C4 -4OTU 2.6 ?
2 PsiBlast_PDB 72.7233% -73 - C4 -4OTT - ? -
6 PsiBlast_PDB 72.6134% -79 - C4 -3WHS 2.9 GGT_BACSU
57 HHSearch 72.5434% -88 - C4 -2QMC 2.4 ?
12 PsiBlast_PDB 70.6432% -81 - C4 -2NQO - ? -
14 PsiBlast_PDB 70.5332% -84 - C4 -2QMC 2.4 ?
20 PsiBlast_PDB 70.4231% -74 - C4 -2E0X - ? -
56 HHSearch 70.2733% -93 - C4 -2DG5 2.7 ?
15 PsiBlast_PDB 70.2732% -83 - C4 -3FNM 2.8 ?
13 PsiBlast_PDB 70.2632% -83 - C4 -2QM6 2.6 ?
27 PsiBlast_CBE 70.1632% -83 - C4 -2QM6 2.7 ?
25 PsiBlast_CBE 69.7132% -82 - C4 -3FNM 2.8 ?
19 PsiBlast_PDB 69.5931% -76 - C4 -2DG5 2.7 ?
26 PsiBlast_CBE 69.5732% -84 - C4 -2QMC 2.4 ?
17 PsiBlast_PDB 69.5331% -74 - C4 -2DBW 2.7 ?
22 PsiBlast_CBE 69.2432% -70 - C4 -2Z8K 2.8 GGT_ECOLI
18 PsiBlast_PDB 69.1931% -76 - C4 -2DBX 2.7 GGT_ECOLI
11 PsiBlast_PDB 69.0232% -73 - C4 -2Z8K 2.8 GGT_ECOLI
24 PsiBlast_CBE 68.9632% -71 - C4 -2Z8I 2.7 ?
9 PsiBlast_PDB 68.8632% -72 - C4 -2Z8I 2.7 ?
10 PsiBlast_PDB 68.6432% -72 - C4 -2Z8J 2.4 GGT_ECOLI
58 HHSearch 68.3532% -88 - C4 -4GDX 2.9 GGT1_HUMAN
23 PsiBlast_CBE 67.9032% -69 - C4 -2Z8J 2.7 ?
30 PsiBlast_CBE 65.7832% -83 - C4 -4ZC6 2.7 GGT1_HUMAN
29 PsiBlast_CBE 65.5632% -85 - C4 -4ZCG Error ?
28 PsiBlast_CBE 64.9532% -84 - C4 -4GDX Error GGT1_HUMAN
31 PsiBlast_CBE 64.8432% -85 - C4 -4ZBK 2.6 ?
36 PsiBlast_CBE 48.1531% -45 - C4 -2QM6 3.3 ?
35 PsiBlast_CBE 47.6731% -42 - C4 -3FNM 3.7 ?
37 PsiBlast_CBE 47.5431% -47 - C4 -2QM6 3.1 ?
62 HHSearch 47.0331% -30 - C4 -4GDX 3.5 ?
34 PsiBlast_CBE 46.8731% -40 - C4 -3FNM 4.0 ?
61 HHSearch 46.4838% -28 - C4 -2DG5 2.5 ?
74 Fugue 45.1631% -21 - C4 -4GDX 3.5 ?
45 PsiBlast_CBE 44.9435% -27 - C4 -2Z8I 3.4 ?
42 PsiBlast_CBE 44.6135% -29 - C4 -2Z8J 1.9 ?
43 PsiBlast_CBE 44.4135% -28 - C4 -2Z8J 2.1 GGT_ECOLI
44 PsiBlast_CBE 44.0935% -25 - C4 -2Z8I 3.4 ?
41 PsiBlast_CBE 44.0735% -26 - C4 -2Z8K 3.2 ?
40 PsiBlast_CBE 43.6635% -28 - C4 -2Z8K 2.5 ?
46 PsiBlast_CBE 43.1431% -32 - C4 -3WHS 4.1 ?
48 PsiBlast_CBE 41.9531% -33 - C4 -3A75 4.4 ?
47 PsiBlast_CBE 41.4531% -36 - C4 -3A75 4.5 ?
49 PsiBlast_CBE 39.1632% -24 - C4 -4OTU 3.9 ?
63 HHSearch 38.1430% -28 - C4 -3G9K 3.4 ?