@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Rv3834c: (2016-05-23 )
MIDLKLLRENPDAVRRSQLSRGEDPALVDALLTADAARRAVISTADSLRAEQKAASKSVGGASPEERPPLLRRAKELAEQVKAAEADEVEAEAAFTAAHLAISNVIVDGVPAGGEDDYAVLDVVGEPSYLENPKDHLELGESLGLIDMQRGAKVSGSRFYFLTGRGALLQLGLLQLALKLAVDNGFVPTIPPVLVRPEVMVGTGFLGAHAEEVYRVEGDGLYLVGTSEVPLAGYHSGEILDLSRGPLRYAGWSSCFRREAGSHGKDTRGIIRVHQFDKVEGFVYCTPADAEHEHERLLGWQRQMLARIEVPYRVIDVAAGDLGSSAARKFDCEAWIPTQGAYRELTSTSNCTTFQARRLATRYRDASGKPQIAATLNGTLATTRWLVAILENHQRPDGSVRVPDALVPFVGVEVLEPVA

Atome Classification :

(33 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SRP_C_3(1WLE)
SYSM_BOVIN
[Raw transfer]




SRP_D_4(1WLE)
SYSM_BOVIN
[Raw transfer]




SRP_C_3(1WLE)
SYSM_BOVIN
[Raw transfer]




ATP_A_3(3LSS)
?
[Raw transfer]




ATP_A_3(3LSS)
?
[Raw transfer]




SRP_C_3(1WLE)
SYSM_BOVIN
[Raw transfer]




SSA_B_11(2DQ0)
SYS_PYRHO
[Raw transfer]




ATP_B_7(3LSS)
?
[Raw transfer]




AHX_C_3(1SES)
SYS_THET2
[Raw transfer]




SSA_A_3(2DQ3)
SYS_AQUAE
[Raw transfer]




SSA_A_7(2DQ0)
SYS_PYRHO
[Raw transfer]




ATP_B_7(3LSS)
?
[Raw transfer]




ATP_A_2(3QO7)
SYSC_CANAL
[Raw transfer]




SSA_A_3(2DQ3)
SYS_AQUAE
[Raw transfer]




AHX_C_3(1SES)
SYS_THET2
[Raw transfer]




SSA_A_2(3QO8)
SYSC_CANAL
[Raw transfer]




SSA_A_2(4L87)
SYSC_HUMAN
[Raw transfer]




SSA_C_3(1SET)
SYS_THET2
[Raw transfer]




AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]




AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]




SSA_D_4(1SET)
SYS_THET2
[Raw transfer]




AMP_A_3(3ERR)
DYHC1_MOUSE
[Raw transfer]




AMP_B_8(2ZR2)
SYS_PYRHO
[Raw transfer]




AMP_D_4(1SES)
SYS_THET2
[Raw transfer]




ANP_A_4(4RQF)
SYSC_HUMAN
[Raw transfer]




AMP_B_4(3ERR)
SYS_THET2
[Raw transfer]




ANP_B_7(4RQF)
SYSC_HUMAN
[Raw transfer]




47 HHSearch 93.9842% -75 - C3 -2DQ0 6.4 SYS_PYRHO
4 PsiBlast_PDB 92.4542% -82 - C3 -2DQ3 6.7 SYS_AQUAE
45 HHSearch 92.2742% -81 - C3 -2DQ3 6.5 SYS_AQUAE
1 PsiBlast_PDB 91.8239% -77 - C3 -2DQ0 - SYS_PYRHO -
22 PsiBlast_CBE 90.3139% -79 - C3 -2DQ0 6.8 SYS_PYRHO
2 PsiBlast_PDB 89.9039% -76 - C3 -2ZR2 - SYS_PYRHO -
21 PsiBlast_CBE 89.4539% -76 - C3 -2ZR2 5.7 SYS_PYRHO
3 PsiBlast_PDB 89.0639% -74 - C3 -2ZR3 - SYS_PYRHO -
44 HHSearch 88.7941% -79 - C3 -1SES 6.3 SYS_THET2
5 PsiBlast_PDB 87.6840% -76 - C3 -1SRY - SYS_THET2 -
7 PsiBlast_PDB 87.6540% -76 - C3 -1SES 6.3 SYS_THET2
23 PsiBlast_CBE 87.6040% -77 - C3 -1SET 7.1 SYS_THET2
8 PsiBlast_PDB 87.0040% -75 - C3 -1SET 6.8 SYS_THET2
24 PsiBlast_CBE 86.1440% -75 - C3 -1SES 5.9 SYS_THET2
36 Fugue 84.9535% -78 - C3 -3LSS 5.7 ?
50 HHSearch 84.1234% -77 - C3 -3QNE - SYSC_CANAL -
11 PsiBlast_PDB 84.0133% -80 - C3 -4RQF 4.7 SYSC_HUMAN
49 HHSearch 83.7337% -77 - C3 -3VBB - SYSC_HUMAN -
48 HHSearch 83.6835% -79 - C3 -1WLE 7.2 SYSM_BOVIN
33 PsiBlast_CBE 83.4034% -80 - C3 -3LSS 5.7 ?
13 PsiBlast_PDB 82.9533% -78 - C3 -4L87 7.3 SYSC_HUMAN
46 HHSearch 82.9335% -67 - C3 -3LSS 6.4 ?
18 PsiBlast_PDB 82.5233% -72 - C3 -3QO8 7.4 SYSC_CANAL
17 PsiBlast_PDB 82.1233% -72 - C3 -3QO7 4.4 SYSC_CANAL
27 PsiBlast_CBE 82.0933% -78 - C3 -4RQF 3.7 SYSC_HUMAN
37 Fugue 81.7337% -71 - C3 -3ERR 6.2 DYHC1_MOUSE (first)
35 Fugue 81.4133% -78 - C3 -1WLE 7.2 SYSM_BOVIN
15 PsiBlast_PDB 81.0434% -76 - C3 -3LSS 6.4 ?
25 PsiBlast_CBE 79.0641% -82 - C3 -3ERR 6.0 SYS_THET2
9 PsiBlast_PDB 79.0041% -81 - C3 -3ERR 6.2 DYHC1_MOUSE (first)
51 HHSearch 78.3142% -83 - C3 -3ERR 6.2 DYHC1_MOUSE (first)
20 PsiBlast_PDB 74.4537% -81 - C3 -1WLE 7.2 SYSM_BOVIN
34 PsiBlast_CBE 72.7137% -77 - C3 -1WLE 7.2 SYSM_BOVIN