@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA0402: (2016-01-03 )
MPTDAKRPLQLNDQGQLRHFISLDGLPRELLTEILDTADSFLEVGARAVKKVPLLRGKTVCNVFFENSTRTRTTFELAAQRLSADVISLNVSTSSTSKGETLTDTLRNLEAMAADMFVVRHSDSGAAHFIAEHVSPNVAVINGGDGRHAHPTQGMLDMLTIRRHKGNFEQLSVAIVGDILHSRVARSNMLALKTLGCPDIRVIAPRTLLPIGLEEQYGVRVFTNADEGLKDVDVVIMLRLQRERMQGGLLPSEGEFFKLYGLTEKRLKLAKPDAIVMHPGPINRGVEIESAVADGAQSVILNQVTYGIAIRMAVLSMAMSGQNTQRQLEQEDAE

Atome Classification :

(57 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PAL_B_5(4BJH)
PYRB_AQUAE
[Raw transfer]




PAL_C_8(4KGX)
?
[Raw transfer]




PAL_A_5(4KH1)
?
[Raw transfer]




PAL_A_7(1D09)
PYRB_ECOLI
[Raw transfer]




PAL_A_5(4KH0)
?
[Raw transfer]




PAL_A_5(4KGV)
?
[Raw transfer]




PAL_C_8(8ATC)
PYRB_ECOLI
[Raw transfer]




PAL_A_5(4F04)
PYRB_ECOLI
[Raw transfer]




6PR_C_7(2H3E)
PYRB_ECOLI
[Raw transfer]




PAL_C_8(1EKX)
PYRB_ECOLI
[Raw transfer]




PAL_A_6(1EKX)
PYRB_ECOLI
[Raw transfer]




PAL_D_4(1ML4)
PYRB_PYRAB
[Raw transfer]




PAL_B_7(1EKX)
PYRB_ECOLI
[Raw transfer]




6PR_A_8(2H3E)
PYRB_ECOLI
[Raw transfer]




PAL_D_4(1ML4)
PYRB_PYRAB
[Raw transfer]




PAL_C_11(4KH1)
?
[Raw transfer]




PAL_C_8(4F04)
PYRB_ECOLI
[Raw transfer]




PAL_A_5(4KGX)
?
[Raw transfer]




PAL_C_8(4KGV)
?
[Raw transfer]




PAL_C_10(4KH0)
?
[Raw transfer]




PAL_A_7(8ATC)
PYRB_ECOLI
[Raw transfer]




1IP_C_9(2IPO)
PYRB_ECOLI
[Raw transfer]




PAL_C_8(1D09)
PYRB_ECOLI
[Raw transfer]




1IP_A_7(2IPO)
PYRB_ECOLI
[Raw transfer]




CP_A_4(3R7F)
PYRB_BACSU
[Raw transfer]




CP_A_4(3R7F)
PYRB_BACSU
[Raw transfer]




EOP_A_7(2FZC)
PYRB_ECOLI
[Raw transfer]




CP_A_10(1ZA2)
PYRB_ECOLI
[Raw transfer]




CP_C_16(3R7F)
PYRB_BACSU
[Raw transfer]




CP_C_11(1ZA2)
PYRB_ECOLI
[Raw transfer]




PCT_C_10(2HSE)
PYRB_ECOLI
[Raw transfer]




CP_B_11(3R7F)
PYRB_BACSU
[Raw transfer]




EOB_C_10(2FZG)
PYRB_ECOLI
[Raw transfer]




EOB_A_9(2FZG)
PYRB_ECOLI
[Raw transfer]




EOZ_A_7(2FZK)
PYRB_ECOLI
[Raw transfer]




EOP_C_8(2FZC)
PYRB_ECOLI
[Raw transfer]




PCT_A_6(2HSE)
PYRB_ECOLI
[Raw transfer]




EOZ_C_8(2FZK)
PYRB_ECOLI
[Raw transfer]




PCT_A_7(2A0F)
PYRB_ECOLI
[Raw transfer]




FLC_B_5(3D6N)
PYRB_AQUAE
[Raw transfer]




ASP_A_7(2HSE)
PYRB_ECOLI
[Raw transfer]




AL0_G_9(2AIR)
PYRB_ECOLI
[Raw transfer]




NCD_G_10(1R0C)
PYRB_ECOLI
[Raw transfer]




AL0_A_10(2AIR)
PYRB_ECOLI
[Raw transfer]




NCD_A_9(1R0C)
PYRB_ECOLI
[Raw transfer]




3 PsiBlast_PDB 95.8339%-110 - C6 -3R7F 4.5 PYRB_BACSU
102 HHSearch 95.8138%-119 - C6 -3R7F 4.5 PYRB_BACSU
6 PsiBlast_PDB 95.6039%-121 - C6 -3D6N 3.7 PYRB_AQUAE
5 PsiBlast_PDB 95.3439%-121 - C6 -4BJH 6.2 PYRB_AQUAE
23 PsiBlast_CBE 94.0939%-106 - C6 -3R7L - PYRB_BACSU -
27 PsiBlast_CBE 94.0039%-110 - C6 -3R7F 3.5 PYRB_BACSU
21 PsiBlast_CBE 93.9939%-106 - C6 -3R7L - PYRB_BACSU -
26 PsiBlast_CBE 93.9239%-106 - C6 -3R7F 4.2 PYRB_BACSU
29 PsiBlast_CBE 93.4939%-110 - C6 -3R7D - PYRB_BACSU -
22 PsiBlast_CBE 93.4539%-103 - C6 -3R7L - PYRB_BACSU -
24 PsiBlast_CBE 93.3639%-104 - C6 -3R7L - PYRB_BACSU -
28 PsiBlast_CBE 93.1539%-113 - C6 -3R7D - PYRB_BACSU -
2 PsiBlast_PDB 92.8939%-109 - C6 -3R7D - PYRB_BACSU -
25 PsiBlast_CBE 92.8239%-103 - C6 -3R7L - PYRB_BACSU -
4 PsiBlast_PDB 92.7439%-107 - C6 -3R7L - PYRB_BACSU -
46 PsiBlast_CBE 92.6633%-119 - C6 -2BE7 - ? -
78 PsiBlast_CBE 92.5934%-110 - C6 -2AIR 3.1 PYRB_ECOLI
19 PsiBlast_PDB 92.3234%-108 - C6 -1RAB - PYRB_ECOLI -
11 PsiBlast_PDB 92.2633%-119 - C6 -2BE7 - ? -
18 PsiBlast_PDB 92.2034%-108 - C6 -1RAA - PYRB_ECOLI -
81 PsiBlast_CBE 91.9134%-108 - C6 -1R0C 3.6 PYRB_ECOLI
73 PsiBlast_CBE 91.8234%-108 - C6 -2FZG 2.9 PYRB_ECOLI
17 PsiBlast_PDB 91.7034%-108 - C6 -1EKX 7.6 PYRB_ECOLI
51 PsiBlast_CBE 91.5434%-105 - C6 -1EKX 7.5 PYRB_ECOLI
82 PsiBlast_CBE 91.3734%-108 - C6 -1R0C 3.7 PYRB_ECOLI
69 PsiBlast_CBE 91.3534%-104 - C6 -2H3E 7.3 PYRB_ECOLI
75 PsiBlast_CBE 91.0334%-106 - C6 -2FZC 2.2 PYRB_ECOLI
14 PsiBlast_PDB 91.0334%-101 - C6 -1D09 7.1 PYRB_ECOLI
74 PsiBlast_CBE 91.0034%-104 - C6 -2FZG 5.1 PYRB_ECOLI
71 PsiBlast_CBE 90.9934%-104 - C6 -2FZK 2.3 PYRB_ECOLI
52 PsiBlast_CBE 90.9534%-103 - C6 -4KH1 7.8 ?
67 PsiBlast_CBE 90.9134%-105 - C6 -2IPO 6.8 PYRB_ECOLI
50 PsiBlast_CBE 90.8934%-104 - C6 -1EKX 7.7 PYRB_ECOLI
60 PsiBlast_CBE 90.8634%-104 - C6 -4KGV 8.1 ?
72 PsiBlast_CBE 90.8234%-104 - C6 -2FZK 3.8 PYRB_ECOLI
63 PsiBlast_CBE 90.8034%-106 - C6 -4F04 7.8 PYRB_ECOLI
61 PsiBlast_CBE 90.7734%-106 - C6 -4KGV 8.0 ?
58 PsiBlast_CBE 90.7234%-102 - C6 -4KGX 7.9 ?
80 PsiBlast_CBE 90.7134%-106 - C6 -1ZA2 3.2 PYRB_ECOLI
59 PsiBlast_CBE 90.6734%-105 - C6 -4KGX 7.7 ?
64 PsiBlast_CBE 90.6334%-104 - C6 -4F04 8.0 PYRB_ECOLI
79 PsiBlast_CBE 90.6034%-106 - C6 -1ZA2 2.9 PYRB_ECOLI
77 PsiBlast_CBE 90.5434%-104 - C6 -2AIR 2.9 PYRB_ECOLI
70 PsiBlast_CBE 90.4934%-105 - C6 -2H3E 7.1 PYRB_ECOLI
48 PsiBlast_CBE 90.4934%-103 - C6 -1D09 6.8 PYRB_ECOLI
53 PsiBlast_CBE 90.4734%-105 - C6 -4KH1 7.9 ?
100 PsiBlast_CBE 90.3534%-105 - C6 -8ATC 6.1 PYRB_ECOLI
49 PsiBlast_CBE 90.2334%-104 - C6 -2HSE 3.2 PYRB_ECOLI
54 PsiBlast_CBE 90.1534%-105 - C6 -4KH0 8.0 ?
10 PsiBlast_PDB 90.0734%-113 - C6 -1ML4 8.0 PYRB_PYRAB
68 PsiBlast_CBE 90.0034%-104 * C6 *2IPO 6.0 PYRB_ECOLI
55 PsiBlast_CBE 89.9634%-104 - C6 -4KH0 8.1 ?
99 PsiBlast_CBE 89.7934%-105 - C6 -8ATC 6.4 PYRB_ECOLI
76 PsiBlast_CBE 89.7834%-101 - C6 -2FZC 3.3 PYRB_ECOLI
16 PsiBlast_PDB 89.7734%-100 - C6 -2HSE 2.8 PYRB_ECOLI
103 HHSearch 89.1433%-121 - C6 -1ML4 7.9 PYRB_PYRAB
15 PsiBlast_PDB 87.8234% -97 - C6 -2A0F 2.9 PYRB_ECOLI