@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2555: (2016-02-08 )
MRDYATTAAGFDLQRTAAATLSGTLQALNACVECCDRHALPGRIALFWEGKDGSRASYTFSELKALSGRFANFLQAQGVRPGDCVAGLLPRTPELLVTILGAWRLGAVYQPLFTAFGPKAIEHRVATAGSKVLVTDAANRDKLDELADPPLAVTVGGPKGQGIRRGDFSFWAELERYPAEFEPVPRSGEDPFLMMFTSGTTGLAKPVPVPLKAILAFVGYLREAVDLRPEDAFWNLADPGWAYGLYYAVAGPLAMGHPTTFYEGPFSVESTCRIIRDYGITNLAGSPTAYRLLMAAGAAAETALKGRLRAVSSAGEPLTPEVIRWFADRLGTTIHDHYGQTELGMVLCNHHALAHPVRVGAAGFACPGHRVVVLDDDLNELPPGQPGILALDRRRSPLMWFPGYQGLETAAFVGDYYLSGDTVELNEDGSISFVGRADDVITTSGYRVGPFDVESALIEHPAVMEAAVIGKPDPERTELVKAFVVLCAGHRPTPELADALQRYVRQRLSAHAYPREIEFLEELPKTPSGKIQRFLLRNQEIARQREAAPRAAAAN

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_7(3C5E)
ACS2A_HUMAN
[Raw transfer]



ATP_A_7(3C5E)
ACS2A_HUMAN
[Raw transfer]



APC_A_7(3DAY)
ACS2A_HUMAN
[Raw transfer]



COA_A_4(3GPC)
ACS2A_HUMAN
[Raw transfer]



AMP_A_3(3EQ6)
ACS2A_HUMAN
[Raw transfer]



PRX_F_6(2P2J)
ACSA_SALTY
[Raw transfer]



AMP_B_5(3EQ6)
ACS2A_HUMAN
[Raw transfer]



PRX_B_4(2P20)
ACSA_SALTY
[Raw transfer]



PRX_A_9(1PG4)
ACSA_SALTY
[Raw transfer]



PRX_A_9(1PG4)
ACSA_SALTY
[Raw transfer]



PRX_B_10(1PG4)
ACSA_SALTY
[Raw transfer]



PRX_B_8(1PG3)
ACSA_SALTY
[Raw transfer]



COA_B_6(3GPC)
ACS2A_HUMAN
[Raw transfer]



PRX_C_3(2P2M)
ACSA_SALTY
[Raw transfer]



PRX_D_4(2P2Q)
ACSA_SALTY
[Raw transfer]



AMP_D_4(1RY2)
ACS1_YEAST
[Raw transfer]



PRX_D_4(2P2M)
ACSA_SALTY
[Raw transfer]



PRX_E_5(2P2J)
ACSA_SALTY
[Raw transfer]



PRX_A_7(1PG3)
ACSA_SALTY
[Raw transfer]



PRX_F_6(2P2B)
ACSA_SALTY
[Raw transfer]



GOL_B_23(3ETC)
?
[Raw transfer]



GOL_A_13(3ETC)
?
[Raw transfer]



GOL_A_13(3ETC)
?
[Raw transfer]



GOL_A_12(3ETC)
?
[Raw transfer]
1 PsiBlast_PDB 94.4531% -88 - C4 -2P2B - ACSA_SALTY -
21 PsiBlast_CBE 93.9931% -89 - C4 -2P2B 7.6 ACSA_SALTY
25 PsiBlast_CBE 93.9231% -88 - C4 -2P2J 7.5 ACSA_SALTY
26 PsiBlast_CBE 93.5731% -90 - C4 -2P20 6.4 ACSA_SALTY
24 PsiBlast_CBE 93.4631% -88 - C4 -2P2Q 6.7 ACSA_SALTY
23 PsiBlast_CBE 93.4531% -90 - C4 -2P2F - ACSA_SALTY -
5 PsiBlast_PDB 93.2231% -89 - C4 -2P2J 6.4 ACSA_SALTY
6 PsiBlast_PDB 93.1231% -89 - C4 -2P20 - ACSA_SALTY -
22 PsiBlast_CBE 93.0331% -87 - C4 -2P2M 6.4 ACSA_SALTY
4 PsiBlast_PDB 93.0331% -89 - C4 -2P2Q - ACSA_SALTY -
2 PsiBlast_PDB 92.9931% -89 - C4 -2P2M 6.7 ACSA_SALTY
3 PsiBlast_PDB 92.9631% -90 - C4 -2P2F - ACSA_SALTY -
8 PsiBlast_PDB 92.9431% -87 - C4 -1PG4 6.5 ACSA_SALTY
7 PsiBlast_PDB 92.9231% -89 - C4 -1PG3 6.6 ACSA_SALTY
27 PsiBlast_CBE 92.8331% -87 - C4 -1PG4 6.1 ACSA_SALTY
35 PsiBlast_CBE 92.5631%-104 - C4 -3ETC 4.1 ?
28 PsiBlast_CBE 92.3831% -88 - C4 -1PG3 5.8 ACSA_SALTY
69 Fugue 92.0229% -86 - C4 -1PG4 - ACSA_SALTY -
43 HHSearch 92.0131% -85 - C4 -1PG4 6.5 ACSA_SALTY
30 PsiBlast_CBE 91.8033% -93 - C4 -2WD9 - ACS2A_HUMAN -
14 PsiBlast_PDB 91.7833% -91 - C4 -3EQ6 6.3 ACS2A_HUMAN
45 HHSearch 91.5332%-100 - C4 -3C5E 8.1 ACS2A_HUMAN
32 PsiBlast_CBE 91.4133% -91 - C4 -3EQ6 6.0 ACS2A_HUMAN
17 PsiBlast_PDB 91.3333% -87 - C4 -1RY2 4.3 ACS1_YEAST
12 PsiBlast_PDB 91.1133% -95 - C4 -3DAY 8.7 ACS2A_HUMAN
16 PsiBlast_PDB 91.0031%-106 - C4 -3ETC 3.1 ?
11 PsiBlast_PDB 90.6433% -96 - C4 -3C5E 8.1 ACS2A_HUMAN
15 PsiBlast_PDB 89.7533% -96 - C4 -3GPC 6.0 ACS2A_HUMAN
31 PsiBlast_CBE 89.5633% -96 - C4 -3GPC 4.2 ACS2A_HUMAN
46 HHSearch 89.1531% -97 - C4 -3ETC 3.1 ?