@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA2806: (2016-02-11 )
MQHPAEHSPLGKTSEYVSSYTPSLLFPISRTAKWAELGLSAETLPYRGVDIWNCYELSWLTPAGKPVVAIGEFSIPADSPNIIESKSFKLYLNSLNQSAFDSREALRAVLQKDLSAAVGAPVGVRLRSLDEVAEEGIGRLPGRCIDELDIAVDGYEQPRPELLRCDAGRIVEEQLYSHLLKSNCPVTGQPDWGTLVVDYRGPALDPASLLAYLVSFRQHQDFHEQCVERIFLDLQRLLQPQALSVYARYVRRGGLDINPYRSLAEVAPDNRRLVRQ

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PRF_A_5(3S19)
QUEF_VIBCH
[Raw transfer]




PRF_A_3(4GHM)
QUEF_VIBCH
[Raw transfer]




PRF_A_5(3RZP)
QUEF_VIBCH
[Raw transfer]




GUN_A_15(3BP1)
QUEF_VIBCH
[Raw transfer]




GD1_B_6(4F8B)
QUEF_BACSU
[Raw transfer]




GD1_D_11(4F8B)
QUEF_BACSU
[Raw transfer]




GOL_A_3(3RJ4)
QUEF_VIBCH
[Raw transfer]




GD1_C_9(4F8B)
QUEF_BACSU
[Raw transfer]




PQ0_E_16(4FGC)
QUEF_BACSU
[Raw transfer]




GD1_E_14(4F8B)
QUEF_BACSU
[Raw transfer]




PQ0_B_6(4FGC)
QUEF_BACSU
[Raw transfer]




PQ0_C_10(4FGC)
QUEF_BACSU
[Raw transfer]




GOL_A_6(3RZP)
QUEF_VIBCH
[Raw transfer]




PQ0_D_13(4FGC)
QUEF_BACSU
[Raw transfer]




CYT_A_3(4IQI)
QUEF_VIBCH
[Raw transfer]




NAP_B_7(3UXV)
QUEF_VIBCH
[Raw transfer]




NAP_A_6(3UXJ)
QUEF_VIBCH
[Raw transfer]




NAP_A_6(3UXJ)
QUEF_VIBCH
[Raw transfer]




8 PsiBlast_PDB 93.0754% -96 - C5 -4GHM 3.5 QUEF_VIBCH
6 PsiBlast_PDB 92.7254% -96 - C5 -3RJ4 3.4 QUEF_VIBCH
2 PsiBlast_PDB 92.5454% -96 - C5 -4IQI 2.7 QUEF_VIBCH
3 PsiBlast_PDB 92.2554% -95 - C5 -3S19 3.2 QUEF_VIBCH
20 HHSearch 92.1053% -96 - C5 -3UXJ 4.2 QUEF_VIBCH
4 PsiBlast_PDB 92.0554% -95 - C5 -3UXJ 4.2 QUEF_VIBCH
7 PsiBlast_PDB 91.8554% -98 - C5 -3UXV 4.5 QUEF_VIBCH
5 PsiBlast_PDB 91.8054% -95 - C5 -3RZP 4.3 QUEF_VIBCH
1 PsiBlast_PDB 91.2554%-100 - C5 -3BP1 3.9 QUEF_VIBCH
18 PsiBlast_CBE 55.9837%-121 - C5 -4FGC 5.4 QUEF_BACSU
17 PsiBlast_CBE 55.8337%-116 - C5 -4FGC 5.5 QUEF_BACSU
19 PsiBlast_CBE 55.7037%-120 - C5 -4FGC 5.4 QUEF_BACSU
10 PsiBlast_PDB 55.2037%-126 - C5 -4FGC - QUEF_BACSU -
16 PsiBlast_CBE 55.1037%-119 - C5 -4FGC 3.8 QUEF_BACSU
15 PsiBlast_CBE 52.5639% -99 - C5 -4F8B 4.8 QUEF_BACSU
13 PsiBlast_CBE 51.9439%-106 - C5 -4F8B 5.2 QUEF_BACSU
12 PsiBlast_CBE 51.7739%-106 - C5 -4F8B 4.8 QUEF_BACSU
14 PsiBlast_CBE 51.3739%-105 - C5 -4F8B 5.0 QUEF_BACSU
9 PsiBlast_PDB 51.3539%-103 - C5 -4F8B - QUEF_BACSU -
25 HHSearch 48.9418%-116 * C5 *1IS8 - GCH1_RAT -