@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA3447: (2016-02-17 )
MSGLLDLLEIRKAYGDTRVLEGVALSLAPGEVVSLLGPSGCGKSTLLRIAAGLDDDFQGTVERNPILGFGPDGENGRSGGIGVVFQEPRLLPWLTVAQNVGFADGWLEDEHWVERLLADVGLAGCGGLLPKQLSGGMAQRAAIARGLYGRPQVLLLDEPFSAVDAFTRMRLQDLLQDVVQNYEISVLLVTHDLDEAFYLADRVLLMGGRPGHIRREFHVPLARPRDRRAVELAYLRGEALTEMQRAHVL

Atome Classification :

(45 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ANP_J_5(3C41)
?
[Raw transfer]




AGS_B_6(3C4J)
?
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




AGS_A_4(3C4J)
?
[Raw transfer]




ANP_K_6(3C41)
?
[Raw transfer]




ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




ADP_A_5(2Q0H)
?
[Raw transfer]




ADP_A_2(4U00)
?
[Raw transfer]




ADP_B_6(2Q0H)
?
[Raw transfer]




ATP_C_3(1VCI)
?
[Raw transfer]




ATP_A_5(1L2T)
Y796_METJA
[Raw transfer]




ADP_A_5(2OLJ)
?
[Raw transfer]




ADP_B_6(2OLJ)
?
[Raw transfer]




ATP_B_6(1L2T)
Y796_METJA
[Raw transfer]




AT4_A_5(2OLK)
?
[Raw transfer]




AT4_D_8(2OLK)
?
[Raw transfer]




ANP_A_2(4AYW)
ABCBA_HUMAN
[Raw transfer]




AT4_B_6(2OLK)
?
[Raw transfer]




ADP_A_3(3TIF)
Y796_METJA
[Raw transfer]




AT4_C_7(2OLK)
?
[Raw transfer]




ADP_B_8(3TIF)
Y796_METJA
[Raw transfer]




21 PsiBlast_CBE 84.4438%-134 - C1 -1Z47 - ? -
113 HHSearch 84.2434%-111 - C1 -2OLJ - ? -
48 PsiBlast_CBE 83.8035%-119 - C1 -3PUW - MALK_ECOLI -
50 PsiBlast_CBE 83.3435%-121 - C1 -3PUV - MALK_ECOLI -
40 PsiBlast_CBE 83.0735%-118 - C1 -3RLF - MALK_ECOLI -
45 PsiBlast_CBE 83.0535%-119 - C1 -3PUX - MALK_ECOLI -
44 PsiBlast_CBE 83.0535%-122 - C1 -3PUY - MALK_ECOLI -
80 PsiBlast_CBE 82.9732%-136 - C1 -3TUZ - METN_ECOLI -
38 PsiBlast_CBE 82.9335%-116 - C1 -4KI0 - ? -
46 PsiBlast_CBE 82.8635%-120 - C1 -3PUX - MALK_ECOLI -
127 Fugue 82.6932%-103 - C1 -1Z47 - ? -
47 PsiBlast_CBE 82.5935%-119 - C1 -3PUW - MALK_ECOLI -
54 PsiBlast_CBE 82.5635%-122 - C1 -2AWN - MALK_ECOLI -
84 PsiBlast_CBE 82.2732%-131 - C1 -3TUI - METN_ECOLI -
39 PsiBlast_CBE 82.1735%-117 - C1 -3RLF - MALK_ECOLI -
1 PsiBlast_PDB 82.0038%-128 - C1 -1Z47 - ? -
42 PsiBlast_CBE 81.8735%-122 - C1 -3PUZ - MALK_ECOLI -
61 PsiBlast_CBE 81.7835%-119 - C1 -2R6G - MALK_ECOLI (first) -
103 HHSearch 81.6735%-116 - C1 -1Z47 - ? -
81 PsiBlast_CBE 81.5732%-130 - C1 -3TUI - METN_ECOLI -
36 PsiBlast_CBE 79.9635%-118 - C1 -3C41 5.8 ?
12 PsiBlast_PDB 79.9135%-118 - C1 -2OLJ 5.8 ?
27 PsiBlast_CBE 79.7735%-118 - C1 -3C4J 5.2 ?
4 PsiBlast_PDB 79.4133%-110 - C1 -4U00 6.0 ?
34 PsiBlast_CBE 79.3635%-115 - C1 -2OLK 6.2 ?
26 PsiBlast_CBE 79.3236%-113 - C1 -4YMU 5.7 ?
28 PsiBlast_CBE 79.1035%-117 - C1 -2Q0H 5.8 ?
32 PsiBlast_CBE 78.8335%-114 - C1 -2OLK 6.4 ?
13 PsiBlast_PDB 78.7135%-113 - C1 -2OLK 6.2 ?
33 PsiBlast_CBE 78.0035%-112 - C1 -2OLK 6.2 ?
17 PsiBlast_PDB 78.0035%-113 - C1 -3C41 6.7 ?
25 PsiBlast_CBE 77.8036%-112 - C1 -4YMV 4.8 ?
35 PsiBlast_CBE 77.5235%-112 - C1 -2OLJ 5.9 ?
8 PsiBlast_PDB 76.7436%-109 - C1 -4YMU 5.7 ?
16 PsiBlast_PDB 76.6435%-110 - C1 -3C4J 6.8 ?
15 PsiBlast_PDB 76.3435%-113 - C1 -2Q0H 5.6 ?
9 PsiBlast_PDB 75.8436%-110 - C1 -4YMV 5.8 ?
75 PsiBlast_CBE 71.8534%-116 - C1 -3TIF 4.2 Y796_METJA
76 PsiBlast_CBE 71.3934%-113 - C1 -3TIF 4.0 Y796_METJA
72 PsiBlast_CBE 70.6834%-113 - C1 -1L2T 4.6 Y796_METJA
73 PsiBlast_CBE 70.6734%-113 - C1 -1L2T 4.3 Y796_METJA
60 PsiBlast_CBE 69.7833%-143 - C1 -1VCI 3.9 ?
94 PsiBlast_CBE 52.0431%-103 - C1 -4AYX 5.8 ABCBA_HUMAN
95 PsiBlast_CBE 51.3331% -99 - C1 -4AYT 5.7 ABCBA_HUMAN
93 PsiBlast_CBE 48.4231%-106 - C1 -4AYW 5.4 ABCBA_HUMAN