@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA4201: (2016-02-24 )
MGQDKLKVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVDTASGLLGAEEERRLLASKVKEVPPDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLASAMAMDKDVAKRLFLAAGVETASWLMAPASEEEVREQLGFPLVVKPNSQGSTVGLSIVHSQAELQPAIELAGRYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEHKYQAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQGRLWCLEVNTLPGMTATSLLPQAAAAAGIGFAELCERICRLGIERCKGARKARS

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_5(1IOV)
DDLB_ECOLI
[Raw transfer]




ATP_B_11(4C5C)
DDLB_ECOLI
[Raw transfer]




ATP_A_7(2ZDQ)
DDL_THET8
[Raw transfer]




ATP_A_3(4C5C)
DDLB_ECOLI
[Raw transfer]




ADP_A_4(4C5A)
DDLB_ECOLI
[Raw transfer]




ATP_A_6(3R5X)
DDL_BACAN
[Raw transfer]




ADP_B_10(4C5A)
DDLB_ECOLI
[Raw transfer]




ADP_B_12(4C5B)
DDLB_ECOLI
[Raw transfer]




ATP_A_6(3R5X)
DDL_BACAN
[Raw transfer]




ADP_A_4(1IOW)
DDLB_ECOLI
[Raw transfer]




ADP_A_3(4C5B)
DDLB_ECOLI
[Raw transfer]




ADP_A_4(2DLN)
DDLB_ECOLI
[Raw transfer]




PHY_A_6(1EHI)
DDL_LEUMM
[Raw transfer]




PHY_A_6(1EHI)
DDL_LEUMM
[Raw transfer]




PHY_A_4(1E4E)
VANA_ENTFC
[Raw transfer]




ANP_A_2(4L1K)
?
[Raw transfer]




ATP_A_2(3R5F)
?
[Raw transfer]




PHY_B_16(1E4E)
VANA_ENTFC
[Raw transfer]




PHY_A_4(1E4E)
VANA_ENTFC
[Raw transfer]




ADP_A_2(3RFC)
?
[Raw transfer]




ADP_A_3(4ME6)
?
[Raw transfer]




DAL_B_5(2YZM)
DDL_THET8
[Raw transfer]




DAL_C_6(2YZM)
DDL_THET8
[Raw transfer]




DAL_D_17(2ZDH)
DDL_THET8
[Raw transfer]




DAL_A_13(2ZDH)
DDL_THET8
[Raw transfer]




EDO_A_3(3R23)
DDL_BACAN
[Raw transfer]




PHY_A_5(1IOW)
?
[Raw transfer]




ADP_A_4(1IOW)
?
[Raw transfer]




EDO_A_4(4EG0)
DDL_BURA4
[Raw transfer]




DAL_A_4(2YZM)
DDL_THET8
[Raw transfer]




EDO_B_5(4EG0)
DDL_BURA4
[Raw transfer]




G1L_A_3(2I80)
DDL_STAAC
[Raw transfer]




DAL_B_6(2ZDQ)
DDL_THET8
[Raw transfer]




79 HHSearch 91.5236%-111 - C1 -3R5X 6.0 DDL_BACAN
9 PsiBlast_PDB 91.4934%-100 - C1 -3I12 - DDLA_SALTY -
22 PsiBlast_CBE 91.3137% -89 - C1 -4C5B 7.3 DDLB_ECOLI
47 PsiBlast_CBE 90.9133% -94 - C1 -3R5F 4.0 ?
46 PsiBlast_CBE 90.5033% -95 - C1 -3RFC 3.6 ?
4 PsiBlast_PDB 90.2937% -86 - C1 -4C5B 7.5 DDLB_ECOLI
23 PsiBlast_CBE 90.2737% -87 - C1 -4C5A 6.9 DDLB_ECOLI
21 PsiBlast_CBE 90.2437% -86 - C1 -4C5C 8.5 DDLB_ECOLI
5 PsiBlast_PDB 90.1237% -88 - C1 -4C5C 8.3 DDLB_ECOLI
8 PsiBlast_PDB 89.9933%-110 - C1 -3R5X 6.0 DDL_BACAN
48 PsiBlast_CBE 89.8033% -98 - C1 -4ME6 3.6 ?
10 PsiBlast_PDB 89.7833% -97 - C1 -3Q1K - DDLA_SALTY -
6 PsiBlast_PDB 89.6137% -90 - C1 -1IOW 7.1 DDLB_ECOLI
24 PsiBlast_CBE 89.4434% -97 - C1 -3I12 - DDLA_SALTY -
25 PsiBlast_CBE 89.3934%-100 - C1 -3I12 - DDLA_SALTY -
3 PsiBlast_PDB 89.3837% -86 - C1 -4C5A 7.5 DDLB_ECOLI
73 HHSearch 89.3733% -91 - C1 -3E5N - ? -
26 PsiBlast_CBE 89.3734% -99 - C1 -3I12 - DDLA_SALTY -
45 PsiBlast_CBE 89.2933% -93 - C1 -4L1K 6.6 ?
2 PsiBlast_PDB 89.2237% -87 - C1 -2DLN 6.3 DDLB_ECOLI
29 PsiBlast_CBE 88.4733% -86 - C1 -1E4E 5.0 VANA_ENTFC
1 PsiBlast_PDB 88.1737% -85 - C1 -1IOV 6.1 DDLB_ECOLI
33 PsiBlast_CBE 87.9735% -86 - C1 -2ZDH 2.5 DDL_THET8
16 PsiBlast_PDB 87.6433% -84 - C1 -1E4E 4.9 VANA_ENTFC
49 PsiBlast_CBE 87.4432% -90 - C1 -1EHI 3.2 DDL_LEUMM
7 PsiBlast_PDB 87.1133%-103 - C1 -3R23 3.1 DDL_BACAN
32 PsiBlast_CBE 86.9535% -86 - C1 -2ZDQ 7.3 DDL_THET8
36 PsiBlast_CBE 86.8135% -84 - C1 -2ZDH 2.5 DDL_THET8
89 Fugue 86.2732% -81 - C1 -1EHI 3.3 DDL_LEUMM
31 PsiBlast_CBE 86.0335% -82 - C1 -2ZDQ 3.9 DDL_THET8
19 PsiBlast_PDB 85.8135% -86 - C1 -2YZM 3.6 DDL_THET8
15 PsiBlast_PDB 84.8730% -81 - C1 -2I80 4.5 DDL_STAAC
44 PsiBlast_CBE 84.0235% -89 - C1 -2YZM 3.4 DDL_THET8
43 PsiBlast_CBE 82.7535% -86 - C1 -2YZM 3.8 DDL_THET8
12 PsiBlast_PDB 82.3435% -94 - C1 -4EG0 3.4 DDL_BURA4
75 HHSearch 81.0532% -74 - C1 -1E4E 5.0 VANA_ENTFC
28 PsiBlast_CBE 80.0935% -96 - C1 -4EG0 2.0 DDL_BURA4
91 Fugue 66.0437% -85 - C1 -1IOW Error ?
92 Fugue 42.1946% -77 - C1 -1IOW Error ?