@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5336: (2016-03-06 )
MSGTLYIVSAPSGAGKTSLVKALLDAAPEVRVSVSHTTRGMRPGEVDGVNYHFTSREEFLAMLERNEFLEHAEVFGNLYGTSQRWVEKTLAEGLDLILEIDWQGAQQVRRLMPEAQSIFILPPSQEALRQRLTNRGQDSDEVIERRMREAVSEMSHYVEYDHLVINDDFAHALDDLKAIFRARQLRQDAQQQRHAELLGRLLA

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

G5P_J_10(2F3R)
KGUA_ECOLI
[Raw transfer]



5GP_M_13(2ANB)
KGUA_ECOLI
[Raw transfer]



GDP_S_19(2AN9)
KGUA_ECOLI
[Raw transfer]



G5P_G_7(2F3R)
KGUA_ECOLI
[Raw transfer]



0O2_D_18(4QRH)
?
[Raw transfer]



0O2_B_8(4QRH)
?
[Raw transfer]



GDP_M_13(2AN9)
KGUA_ECOLI
[Raw transfer]



0O2_C_12(4QRH)
?
[Raw transfer]



5GP_A_4(3TR0)
KGUA_COXBU
[Raw transfer]



5GP_A_4(3TR0)
KGUA_COXBU
[Raw transfer]



5GP_C_11(2J41)
KGUA_STAAC
[Raw transfer]



5GP_A_2(2QOR)
?
[Raw transfer]



5GP_B_8(2J41)
KGUA_STAAC
[Raw transfer]



5GP_D_4(1GKY)
KGUA_YEAST
[Raw transfer]



5GP_D_4(1EX7)
KGUA_YEAST
[Raw transfer]



5GP_D_4(1EX7)
KGUA_YEAST
[Raw transfer]



5GP_D_15(2J41)
KGUA_STAAC
[Raw transfer]



GDP_B_2(1ZNY)
KGUA_MYCTU
[Raw transfer]



GDP_B_2(1ZNZ)
KGUA_MYCTU
[Raw transfer]



FMT_B_2(1Z8F)
KGUA_MYCTU
[Raw transfer]



FMT_A_3(1S4Q)
KGUA_MYCTU
[Raw transfer]



5GP_B_2(1ZNX)
KGUA_MYCTU
[Raw transfer]



ADP_C_3(1LVG)
KGUA_MOUSE
[Raw transfer]



ADP_C_3(1LVG)
KGUA_MOUSE
[Raw transfer]



LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]



LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]



LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]



LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]



CHAIN_X_3(4WSI)
MPP5_HUMAN
[Raw transfer]
-
5 PsiBlast_PDB 97.7162% -99 - C4 -2F3T 3.4 KGUA_ECOLI
6 PsiBlast_PDB 97.5560% -99 - C4 -1S96 - KGUA_ECOLI -
3 PsiBlast_PDB 97.2562% -96 - C4 -2ANC - KGUA_ECOLI -
21 PsiBlast_CBE 96.6762% -99 - C4 -2F3T 2.7 KGUA_ECOLI
1 PsiBlast_PDB 96.5962% -98 - C4 -2AN9 6.4 KGUA_ECOLI
2 PsiBlast_PDB 96.4562% -93 - C4 -2ANB 7.1 KGUA_ECOLI
25 PsiBlast_CBE 95.2662% -95 - C4 -2AN9 6.8 KGUA_ECOLI
56 HHSearch 95.1859% -97 * C4 *1S96 - KGUA_ECOLI -
22 PsiBlast_CBE 94.9162% -98 - C4 -2F3T 3.7 KGUA_ECOLI
23 PsiBlast_CBE 94.8262%-101 - C4 -2F3T 3.5 KGUA_ECOLI
4 PsiBlast_PDB 94.8262% -96 - C4 -2F3R 7.9 KGUA_ECOLI
24 PsiBlast_CBE 92.4262% -93 - C4 -2F3R 9.1 KGUA_ECOLI
54 HHSearch 90.2652% -89 - C4 -3TR0 6.1 KGUA_COXBU
7 PsiBlast_PDB 89.1350% -85 - C4 -3TR0 6.1 KGUA_COXBU
18 PsiBlast_PDB 79.4340% -85 - C4 -1GKY 7.0 KGUA_YEAST
58 HHSearch 79.4236% -95 - C4 -1ZNW - KGUA_MYCTU -
52 HHSearch 78.0341% -85 - C4 -3TAU - KGUA_LISMO -
59 HHSearch 77.9539% -85 - C4 -1EX7 6.8 KGUA_YEAST
13 PsiBlast_PDB 77.7037% -97 - C4 -1ZNY 3.5 KGUA_MYCTU
17 PsiBlast_PDB 77.6140% -85 - C4 -1EX7 6.8 KGUA_YEAST
12 PsiBlast_PDB 77.1737%-101 - C4 -1ZNX 3.6 KGUA_MYCTU
10 PsiBlast_PDB 77.1437% -95 - C4 -1S4Q 3.5 KGUA_MYCTU
14 PsiBlast_PDB 77.0037% -97 - C4 -1ZNZ 4.2 KGUA_MYCTU
15 PsiBlast_PDB 76.6037% -96 - C4 -1Z8F 3.4 KGUA_MYCTU
57 HHSearch 76.5936% -73 - C4 -1LVG 8.3 KGUA_MOUSE
53 HHSearch 75.7132% -76 - C4 -2QOR 8.5 ?
26 PsiBlast_CBE 75.1440% -86 - C4 -4QRH 9.8 ?
20 PsiBlast_PDB 74.2638% -66 - C4 -1LVG 8.4 KGUA_MOUSE
27 PsiBlast_CBE 74.0140% -84 - C4 -4QRH 10.2 ?
29 PsiBlast_CBE 73.7840% -94 - C4 -2J41 7.0 KGUA_STAAC
31 PsiBlast_CBE 73.6540% -92 - C4 -2J41 6.9 KGUA_STAAC
28 PsiBlast_CBE 73.5840% -84 - C4 -4QRH 10.2 ?
30 PsiBlast_CBE 72.9740% -91 - C4 -2J41 7.2 KGUA_STAAC
35 PsiBlast_CBE 64.3534% -71 - C4 -4WSI 4.2 MPP5_HUMAN