@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5514: (2016-03-08 )
MRPLLFSALLLLSGHTQASEWNDSQAVDKLFGAAGVKGTFVLYDVQRQRYVGHDRERAETRFVPASTYKVANSLIGLSTGAVRSADEVLPYGGKPQRFKAWEHDMSLRDAIKASNVPVYQELARRIGLERMRANVSRLGYGNAEIGQVVDNFWLVGPLKISAMEQTRFLLRLAQGELPFPAPVQSTVRAMTLLESGPGWELHGKTGWCFDCTPELGWWVGWVKRNERLYGFALNIDMPGGEADIGKRVELGKASLKALGILP

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PNM_A_3(2WGI)
BLO10_PSEAI
[Raw transfer]



PNM_B_4(2WGI)
BLO10_PSEAI
[Raw transfer]



ZZ7_A_3(2WKH)
BLO10_PSEAI
[Raw transfer]



3VU_A_7(4WZ5)
?
[Raw transfer]



3VU_B_11(4WZ5)
?
[Raw transfer]



GOL_A_6(2RL3)
BLO10_PSEAI
[Raw transfer]



MER_A_3(1H8Y)
?
[Raw transfer]



TLA_B_7(3IF6)
?
[Raw transfer]



IM2_A_8(1H5X)
?
[Raw transfer]



MER_B_6(1H8Y)
?
[Raw transfer]



IM2_B_9(1H5X)
?
[Raw transfer]



EDO_A_10(2WKI)
BLO10_PSEAI
[Raw transfer]
1 PsiBlast_PDB 94.1944%-101 - C3 -4JF4 - ? -
2 PsiBlast_PDB 92.6144%-101 - C3 -4JF5 - ? -
4 PsiBlast_PDB 91.9343% -97 - C3 -4X55 - ? -
21 PsiBlast_CBE 90.6344%-100 - C3 -4JF4 - ? -
13 PsiBlast_PDB 90.6136%-100 - C3 -4S2K - ? -
79 PsiBlast_CBE 90.5336%-107 - C3 -4WMC - ? -
14 PsiBlast_PDB 89.9336% -96 - C3 -4S2N - ? -
26 PsiBlast_CBE 89.6536% -98 - C3 -4S2K - ? -
30 PsiBlast_CBE 89.6436% -98 - C3 -4S2J - ? -
83 PsiBlast_CBE 89.1335% -97 - C3 -4S2M - ? -
25 PsiBlast_CBE 89.1136% -98 - C3 -4S2K - ? -
80 PsiBlast_CBE 88.9336%-106 - C3 -4WMC - ? -
5 PsiBlast_PDB 88.8442% -89 - C3 -4ZDX - ? -
87 PsiBlast_CBE 88.8035%-103 - C3 -4S2L - ? -
27 PsiBlast_CBE 88.5036% -97 - C3 -4S2K - ? -
12 PsiBlast_PDB 88.3236% -99 - C3 -4S2J - ? -
88 PsiBlast_CBE 88.3035%-101 - C3 -4S2L - ? -
84 PsiBlast_CBE 88.1935%-101 - C3 -4S2M - ? -
3 PsiBlast_PDB 88.1844% -98 - C3 -4K0W - ? -
24 PsiBlast_CBE 88.0236% -96 - C3 -4S2N - ? -
81 PsiBlast_CBE 86.6935% -98 - C3 -4WZ5 4.9 ?
82 PsiBlast_CBE 86.5035% -96 - C3 -4WZ5 4.8 ?
67 PsiBlast_CBE 85.6935% -95 - C3 -2WGI 4.6 BLO10_PSEAI
66 PsiBlast_CBE 85.1935% -94 - C3 -2RL3 3.1 BLO10_PSEAI
56 PsiBlast_CBE 84.5435% -91 - C3 -2WKI 3.1 BLO10_PSEAI
58 PsiBlast_CBE 84.0935% -94 - C3 -2WKH 3.3 BLO10_PSEAI
89 PsiBlast_CBE 83.5935% -90 - C3 -3IF6 3.5 ?
68 PsiBlast_CBE 78.9835% -92 - C3 -2WGI 4.6 BLO10_PSEAI
62 PsiBlast_CBE 77.0437% -91 - C3 -1H8Y 3.5 ?
61 PsiBlast_CBE 76.4237% -91 - C3 -1H8Y 3.6 ?
63 PsiBlast_CBE 75.8437% -98 - C3 -1H5X 2.8 ?
64 PsiBlast_CBE 74.6537% -95 - C3 -1H5X 2.6 ?