@TOME V2.3
(Nov 2016)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Comparative Docking Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : PA5516: (2016-03-08 )
MPRTPHLLAIQSHVVFGHAGNAAAVFPMQRIGINVWPLNTVQFSNHTQYGRWTGQVLPPEQIPALVDGIAGIGELGNCDAVLSGYLGSAAQGRAILDVVARIKQANPRALYLCDPVMGHPEKGCIVAPEVSDFLLEEAAAVADYLCPNQLELDSFCDRQPNSLADCVEMARSLLARGPRAILVKHLNYPGKAGDTFEMLLVAADQAWHLQRPLLAFPRQPVGVGDLASGLFLSRLLLGDDLRNAFEFTGAAVHEVLLETQACGSYELELVRAQDRIAHPRVRFDAVRL

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PXL_D_4(1TD2)
PDXY_ECOLI
[Raw transfer]




PXL_E_5(1TD2)
PDXY_ECOLI
[Raw transfer]




PLP_A_7(3KEU)
PDXK_HUMAN
[Raw transfer]




RMC_B_2(1YGJ)
PDXK_SHEEP
[Raw transfer]




PXM_A_5(1RFT)
PDXK_SHEEP
[Raw transfer]




RRC_B_2(1YGK)
PDXK_SHEEP
[Raw transfer]




R6C_B_2(1YHJ)
PDXK_SHEEP
[Raw transfer]




TEP_A_4(4EOH)
PDXK_HUMAN
[Raw transfer]




GT0_A_7(4EN4)
PDXK_HUMAN
[Raw transfer]




GOL_A_5(1UB0)
?
[Raw transfer]




MPD_A_15(2YXU)
PDXK_HUMAN
[Raw transfer]




MPD_A_11(2YXT)
PDXK_HUMAN
[Raw transfer]




MPD_A_11(2YXT)
PDXK_HUMAN
[Raw transfer]




BME_A_6(3PZS)
PDXY_YERPE
[Raw transfer]




1 PsiBlast_PDB 97.8157%-124 - C4 -1TD2 3.5 PDXY_ECOLI
2 PsiBlast_PDB 97.5258%-126 - C4 -3PZS - PDXY_YERPE -
21 PsiBlast_CBE 96.7057%-123 - C4 -1TD2 4.8 PDXY_ECOLI
31 HHSearch 96.5258%-124 - C4 -3PZS 3.1 PDXY_YERPE
53 Fugue 78.8133%-112 - C4 -1LHP - PDXK_SHEEP -
13 PsiBlast_PDB 78.3029%-112 - C4 -2YXT 2.9 PDXK_HUMAN
14 PsiBlast_PDB 77.7529%-114 - C4 -2YXU 3.1 PDXK_HUMAN
11 PsiBlast_PDB 77.6629%-113 - C4 -2AJP - PDXK_HUMAN -
6 PsiBlast_PDB 77.0333%-117 - C4 -1RFU - PDXK_SHEEP -
16 PsiBlast_PDB 76.9029%-114 - C4 -4EN4 3.5 PDXK_HUMAN
28 PsiBlast_CBE 76.8933%-118 - C4 -1RFU - PDXK_SHEEP -
22 PsiBlast_CBE 76.8533%-114 - C4 -1RFV - PDXK_SHEEP -
15 PsiBlast_PDB 76.5429%-111 - C4 -3KEU 3.3 PDXK_HUMAN
32 HHSearch 76.4831%-109 - C4 -2YXT 2.9 PDXK_HUMAN
27 PsiBlast_CBE 76.3433%-115 - C4 -1RFU - PDXK_SHEEP -
25 PsiBlast_CBE 76.3033%-117 - C4 -1RFU - PDXK_SHEEP -
29 PsiBlast_CBE 75.9233%-116 - C4 -1RFU - PDXK_SHEEP -
24 PsiBlast_CBE 75.6333%-116 - C4 -1RFU - PDXK_SHEEP -
30 PsiBlast_CBE 75.4733%-112 - C4 -1LHR - PDXK_SHEEP -
17 PsiBlast_PDB 75.3929%-112 - C4 -4EOH 3.5 PDXK_HUMAN
8 PsiBlast_PDB 74.2233%-113 - C4 -1YGJ 6.6 PDXK_SHEEP
5 PsiBlast_PDB 74.1433%-109 - C4 -1RFT 4.0 PDXK_SHEEP
9 PsiBlast_PDB 71.8533%-109 - C4 -1YGK 5.9 PDXK_SHEEP
10 PsiBlast_PDB 69.9433%-104 - C4 -1YHJ 6.3 PDXK_SHEEP