@TOME V3
(Feb 2022)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : D5Q4H0_CLODI: (2019-01-27 )
MDIISRKYINEGFNSKAYIINDDYILLDGVNQNSYKNYQKYVNVINQISNVKSLEIPRIIELIEPCEEYPNGALIYKMIKGHTFRKEHIEIVNLDNIAKKLAEFMDELYEIRVDFDKDEYIKNELEITEQSVIELKEYLSESNYEKILSWFNEYKNYLLTFNDYHFIHGDLWYENYILNDNNELVGIVDFEGSGMGDPAYDIAALYYLGTGFINKVLSYYKYTDEDLIKRVSMLIKAREIADFDDMVKNYPEEVEEQVDKIKKVL

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GNP_C_13(5IQI)
AACA_STAAU
[Raw transfer]




GDP_A_2(3TDW)
?
[Raw transfer]




GNP_A_5(5IQC)
AACA_STAAU
[Raw transfer]




AMP_A_3(4R78)
?
[Raw transfer]




ADP_A_2(4DCA)
?
[Raw transfer]




57 HHSearch 92.8823% -11 - C- -3N4U - ? -
69 HHSearch 90.6523% 5 - C1 -3HAM - ? -
1 PsiBlast_PDB 90.4923% -15 - C1 -3TDW - ? -
2 PsiBlast_PDB 89.6623% -14 - C1 -3TDV - ? -
59 HHSearch 88.1021% -13 - C1 -3TDW 4.6 ?
61 HHSearch 87.5523% -11 * C1 *5IQC 3.5 AACA_STAAU
16 PsiBlast_PDB 86.4725% -12 - C1 -3SG8 - ? -
17 PsiBlast_PDB 86.2625% -8 - C1 -4DTA - ? -
9 PsiBlast_PDB 85.6725% -10 - C1 -4DT9 - ? -
8 PsiBlast_PDB 85.6125% -12 - C1 -4DT8 - ? -
7 PsiBlast_PDB 85.4325% -9 - C1 -4DTB - ? -
12 PsiBlast_PDB 85.0025% -11 - C1 -3SG9 - ? -
62 HHSearch 84.9322% -13 - C1 -5IQI 4.1 AACA_STAAU
13 PsiBlast_PDB 84.9225% -15 - C1 -6CD7 - ? -
70 HHSearch 84.9022% 3 - C1 -4DCA 3.7 ?
5 PsiBlast_PDB 84.6725% -14 - C1 -4DFB - ? -
11 PsiBlast_PDB 84.5125% -18 - C- -3N4U - ? -
6 PsiBlast_PDB 84.3725% -10 - C1 -4DFU - ? -
4 PsiBlast_PDB 84.3425% -12 - C1 -4DE4 - ? -
19 PsiBlast_PDB 83.2524% -13 - C1 -5C4K - ? -
67 HHSearch 62.1019% 14 - C1 -4R78 4.8 ?