@TOME V3
(Feb 2022)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : BR29_040840T0_kcl95: (2019-03-28 )
CTYSVYDSIGKMVVEDKDLPTNRRDYYTIGKKKYTFYFKENCDFDYSKPPLPRCWHVSGI
Atome Classification :
(20 SA)
----------------------...---......--10.---...------.-...20---------.---------------...--...---------.30..------.....-.40-...--...-...50-----...---.---....60
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------CT
Y
---
S
V
Y
D
S
I
--
G
K
M
---VVE------D-KDLPT---------N---------------RR
D
--
Y
Y
T
---------IG
K
K
K
------
Y
T
F
Y
F-KE--NCD--FDY-SKPPL-----P
R
C
---W---HVSGI
23
SP3
70.87
18%
0
- C- -
-
1JJ2
-
RL24E_HALMA
T:
[4-56]
-----------------RECDY
C
G
T
---
D
I
E
P
G
T
--
G
T
M
---
F
V
---------------------------------------
H
K
D
---------------
G
A
---------
T
T
H
F
C
S
S
--
K
C
E
NN
A
D
L
-
G
R
E
A
R
-----
N
L
E
---
W
---
T
D
T
A
R
19
SP3
65.76
20%
52
* C11 *
-
1LY2
1
CR2_HUMAN
A:
[1-67]
-------------------EAS
C
G
S
---
P
--
P
P
I
LN
G
R
I
---
S
Y
Y
------
S
-
T
P
I
A
V
---------
G
TVIRYSC--------
S
G
T
--
F
R
L
---------
I
G
E
K
S
------
L
L
C
I
T
-
K
D
--
K
V
D
--
G
T
W
-
D
K
P
A
------
P
K
C
---
E
---
Y
F
N
--
21
SP3
64.05
16%
9
- C10 -
-
2PSP
-
TFF2_PIG
A:
[54-106]
------------------------------------------
E
S
E
------
E
-
C
V
M
Q
V
---------
S
A--------------
R
K
N
CG
Y
P
G
---------
I
S
P
E
D
------
C
A
----
A
R
--
N
C
C
--
F
S
D
-
T
I
P
E
V
-----
P
W
C
---
F
---
F
P
M
S
V
27
SP3
59.86
23%
74
- C12 -
0.12
1HLV
-
CENPB_HUMAN
A:
[67-131]
--------------------KT
N
K
L
---
S
P
Y
D
K
L
--
E
G
L
---
L
I
A
WFQQIR
A
-
A
G
L
P
V
---------
K
---------------
G
------
I
---------
I
L
K
E
K
------
A
L
R
I
A
-
E
E
LG
M
D
D
--
F
T
A
-
S
N
G
W
L
-----
D
R
----
F
RRR
R
S
---
2
Fugue
55.59
21%
-
- C- -
-
4IL7
-
?
A:
[138-222]
----------------------
E
N
Y
---
L
I
Y
S
G
F
--
G
T
S
---
L
P
Q
------
T
-
Y
T
I
P
A
---------
N
GYLIISITNTSTGNI
G
Q
I
--
T
L
T
---------
I
G
S
T
T
------
M
T
F
N
L
-
Q
T
--
G
------
E
-
N
K
I
P
V
-----
I
A
G
---
T
---
Q
I
T
N
M
26
SP3
55.48
31%
137
* C12 *
0.08
1SFU
-
?
A:
[6-75]
----------------------
C
T
V
NDA
E
I
F
S
L
V
--
K
K
E
---
V
----------
L
S
L
N
T
---------
N
-----------------
D
--
Y
T
T
AISLSNRLK
I
N
K
K
K
INQQL-
Y
K
L
Q
K
-
E
D
--
T
V
K
--
M
V
P
-
S
N
P
P
K
WFKN-
Y
N
C
------------
25
SP3
54.07
18%
9
- C11 -
-
1QYP
-
?
?:
[1-57]
------------------------------------
G
S
H
---
M
E
Q
------
D
L
K
T
L
P
T
---------
T
---------------
K
I
T
--
C
P
K
---------
C
G
N
D
T
------
A
Y
W
W
E
-
M
Q
--
T
R
A
--
G
D
---
E
P
S
T
IFYKC
T
K
C
GHT
W
---
R
S
Y
E
-
18
SP3
53.11
15%
51
- C10 -
-
1EEJ
-
DSBC_ECOLI
A:
[1-60]
----------------------
D
D
A
---
A
I
Q
Q
T
L
--
A
K
M
GIK
S
S
D
------
I
-
Q
P
A
P
V
---------
A
-----------------
G
--
M
K
T
---------
V
L
T
N
S
------
G
V
L
Y
I
-
T
D
--
D
G
K
--
H
I
I
-
Q
G
P
---------
M
---
Y
---
D
V
S
G
T
17
Fugue
52.36
15%
87
- C10 -
-
3HUH
-
VIR17_SALTY
A:
[20-143]
------IIDRIDHLVLTVSDIS
T
T
I
---
R
F
Y
E
E
V
--
L
G
F
---
S
A
V
------
T
-
F
K
------------
Q
---------------
N
R
K
--
A
L
I
---------
F
G
A
Q
K
------
I
N
L
H
Q
-
Q
E
--
M
E
F
--
E
P
K
-
A
S
R
P
T
-----
P
G
S
---
A
---
D
L
C
F
I
14
Fugue
51.90
24%
-
- C12 -
0.19
2NRR
-
UVRC_THEMA
A:
[344-494]
MEALEELMKLLNMKDFPYRIEG
I
D
I
---
S
H
L
Y
T
V
--
A
S
L
---
V
V
F
------
E
-
D
G
F
P
--------------------------
K
K
G
--
D
Y
R
---------
R
Y
K
I
D
------
D
Y
E
S
I
-
R
T
--
V
V
K
--
R
R
Y
-
S
K
H
P
L
-----
P
N
L
---
L
---
F
V
D
G
G
20
SP3
50.95
16%
56
- C10 -
-
2PSP
-
TFF2_PIG
A:
[2-53]
-----------------------
K
P
---
A
A
C
R
C
S
--
R
------
Q
D
-----------
P
K
---------
N
---------------
R
V
N
CG
F
P
G
---------
I
T
S
D
Q
------
C
F
----
T
S
--
G
C
C
--
F
D
S
-
Q
V
P
G
V
-----
P
W
C
---
F
---
K
P
L
P
A
9
Fugue
50.46
15%
56
- C12 -
-0.04
2JVG
-
SBI_STAAM
A:
[195-266]
----------------------------
G
A
M
V
S
I
--
E
K
A
---
I
V
R
------
H
-
D
E
R
V
K
---------
S
---------------
A
N
D
--
A
I
S
---------
K
L
N
E
K
------
D
S
I
E
N
-
R
R
--
L
A
Q
--
R
E
V
-
N
K
A
P
M
-----
D
V
K
---
E
---
H
L
Q
K
Q
4
Fugue
49.53
6%
-27
- C10 -
-
2MM2
-
?
A:
[1-65]
---------------------N
C
T
A
---
N
I
L
N
I
N
--
E
V
V
---
I
A
T
------
G
-
C
V
P
A
G
---------
G
---------------
N
L
I
--
I
R
V
---------
G
S
D
H
S
------
Y
L
I
R
A
-
T
V
--
S
C
G
--
L
S
L
N
P
S
Q
S
F
-----
I
N
G
---
E
---
S
L
A
S
G
3
Fugue
49.35
12%
-160
- C12 -
0.05
2QDQ
-
A:
[2496-2529]
---------------------G
G
I
A
---
Q
I
I
A
A
Q
--
E
E
M
---
L
R
K
------
E
-
R
E
L
E
E
---------
A
---------------
R
K
K
--
L
A
Q
---------
I
R
Q
Q
Q
--------------------------------------------------
24
SP3
47.71
11%
21
- C10 -
-
1I50
-
RPB9_YEAST
I:
[50-122]
----------------------
T
N
I
---
G
E
T
A
G
V
--
V
Q
D
---
I
G
S
------
D
-
P
T
L
P
R
SDRECPKCH
S
---------------
R
E
N
--
V
F
F
---------
Q
S
Q
Q
R
RKDTSM
V
L
F
F
V
-
C
L
--
S
C
S
--
H
I
F
-
T
S
D
Q
K
-----
N
K
R
---
T
---
Q
F
S
--
11
Fugue
45.23
28%
82
- C9 -
-
1UUN
-
MSPA_MYCS2
A:
[1-184]
-------------------GLD
N
E
L
---
S
L
V
D
G
-----------
Q
------
D
-
R
T
L
T
V
---------
Q
---------------
Q
W
D
--
T
F
L
---------
N
G
V
-----------------------
F
P
L
-
D
R
N
R
L
-----
T
R
E
---
W
---
F
H
S
G
R
13
Fugue
44.27
13%
1
- C12 -
-0.06
1SFC
-
VAMP2_RAT
A:
[25-93]
-------------NLTSNRRLQ
Q
T
Q
---
A
Q
V
D
E
V
--
V
D
I
---
M
R
V
------
N
-
V
D
K
V
L
---------
E
---------------
R
D
Q
--
K
L
S
---------
E
L
D
D
R
------
A
D
A
L
Q
-
A
G
--
A
S
Q
--
F
E
T
-
S
A
A
K
L
-----
K
R
K
---
Y
---
W
W
K
N
L
1
PsiBlast_PDB
37.95
47%
-6
- C7 -
-
4KYS
-
?
A:
[186-206]
------------------------
Y
---
D
L
Y
D
K
L
--
G
K
F
---
T
S
E
------
D
-
I
I
L
P
N
---------
N
---------------
K
-----------------------------------------------------------------------
16
Fugue
37.70
17%
198
- C12 -
0.19
1WMI
-
?
B:
[7-67]
------------------------
G
---
D
V
L
K
E
L
--
E
R
L
---
K
V
E
------
I
-
Q
R
L
E
A
---------
M
LMP------------
E
E
R
--
D
E
D
---------
I
T
E
E
E
------
I
A
E
L
L
-
E
L
--
A
R
D
--
E
D
------------
P
E
N
---
W
---
I
D
A
E
E
8
Fugue
36.13
22%
-114
- C12 -
0.17
3V86
-
?
A:
[1-27]
----------------------
Y
V
Y
---
Q
L
K
D
E
V
--
G
E
L
---
K
G
E
------
V
-
R
A
L
K
D
---------
E
---------------
V
K
D
--
L
K
-----------------------------------------------------------------