@TOME V3
(Feb 2022)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
3D Alignment Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
3D Alignment Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
PDB Ligands
Affinity Score
Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
Sequence Alignment
Tab of Complexes
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : G17_043700T0_k: (2019-03-29 )
KQIAQLKEYLRNPPCKVTIYAPPLKQGQTQLRTVMGFASAGKNEDVPVKIASTGHTYQCRTDATCEEPVCHGLPNGWTYEGVY
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------.........10...-------.--....20.-----..----.-...---.-30.-....--...--40..----......50....----..--..---60-........70-...-------.....---80..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------K
Q
I
A
Q
L
K
E
Y
LRNPP-------
C
--
K
V
T
I
YAP-----PL----K-Q
G
Q
---
T
-
Q
L
R
-
T
V
M
G
--
F
AS--AGKN----EDV
P
V
K
I
ASTG
H
----
T
Y
--
Q
C---RT-DATCEE
P
V
CH-GLP-------NGWTY---EGVY-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
67.44
14%
33
- C8 -
-
1PTF
-
?
?:
[1-87]
--------------------------------------------------------------------M
E
K
K
E
F
H
I
VAETGIHA
R
P
A
T
L
L
V
Q
T
A
S
K
F
N
-------
S
--
D
I
N
L
E
-------------
Y
-
K
G
K
---
S
V
N
L
K
-
S
I
M
G
--
V
M
S
--
L
G
-------------
V
G
Q
G
S
----
D
V
--
T
I
---
T
V
-
D
G
A
D
E
A
E
G
M
A
-
A
I
V
-------
E
T
L
Q
K
---
E
G
L
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
SP3
66.16
20%
52
- C13 -
-
1FX7
-
IDER_MYCTU
A:
[145-230]
--------------------------------------------------------------------------------GADD
A
N
L
V
R
L
T
E
L
P
A
G
S
P
-------
V
--
A
V
V
V
R
Q
L
-----
T
E
----
H
V
Q
G
D
---
I
-
D
L
I
-
T
R
L
K
--
D
A
G
--
V
V
P
N
----
A
R
V
T
V
E
T
T
P
G
G
G
----
V
T
--
I
V
I
P
G
H
E
-
N
V
T
L
P
H
E
M
A
H
-
A
V
-----------
K
V
---
E
K
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
63.47
32%
-48
- C13 -
-
4R80
-
?
B:
[11-67]
------------------------------------------------------------------------------------
K
Q
V
A
K
E
K
I
L
E
Q
N
P
S
-------
S
--
K
V
Q
V
R
R
V
------
Q
----
K
-
Q
G
N
---
T
--
I
R
-
V
E
L
E
--
I
T
E
--
N
G
K
K
----
T
N
I
T
V
E
V
E
K
Q
G
N
----
T
F
--
T
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
Fugue
61.37
16%
-59
* C13 *
-
2MYW
-
?
A:
[7-85]
----------------------------------------------------------------------------------SG
R
E
N
L
Y
F
Q
G
H
M
A
A
P
A
-------
R
--
F
C
V
Y
Y
D
G
-----
H
L
----
P
-
A
T
--------
R
-
V
L
L
M
--
Y
V
R
--
I
G
T
T
----
A
T
I
T
A
R
----
G
H
----
E
F
--
E
V
---
E
A
K
D
Q
N
C
K
V
I
L
T
N
-
G
K
Q
A------
P
D
W
L
A
---
A
E
P
Y
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
SP3
61.02
12%
19
- C8 -
-
1OPD
-
?
?:
[1-85]
--------------------------------------------------------------------M
F
E
Q
E
V
T
I
TAPNGLH
T
R
P
A
A
Q
F
V
K
E
A
K
G
F
T
-------
S
--
E
I
T
V
T
-------------
S
-
N
G
K
---
S
A
S
A
K
-
D
L
F
K
--
L
Q
T
--
L
G
L
T
----
Q
G
T
V
V
T
I
S
A
E
G
E
----
D
E
--
Q
K
---
A
V
-
E
H
L
V
K
--
L
M
A
-
E
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
61.00
19%
61
- C10 -
-
2OPE
-
?
A:
[28-147]
-----------------------------------------------F
E
K
G
Y
Q
S
Q
L
Y
T
E
M
V
G
I
N
N
I
S
K
Q
F
ILKNPLDD
N
Q
T
I
K
S
K
L
E
R
F
V
S
G
Y
K
M
N
P
K
-------
I
A
E
K
Y
N
V
S
V
H
-----
F
V
----
N
-
K
E
K
---
P
-
R
A
Y
-
S
L
V
G
--
V
P
K
--
T
G
T
G
----
Y
T
L
S
V
W
M
N
S
V
G
D
----
G
Y
--
K
C
---
R
D
-
A
A
S
A
R
A
H
L
-
E
-
T
L
S
-------
S
D
V
G
C
---
E
A
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
59.33
25%
138
- C13 -
-
4R80
-
?
A:
[1-76]
--------------------------------------------------------------------------PS
E
E
E
E
K
R
R
A
K
Q
V
A
K
E
K
I
L
E
Q
N
P
S
-------
S
--
K
V
Q
V
R
R
V
------
Q
----
K
-
Q
G
----
N
-
T
I
R
-
V
E
L
E
--
I
T
E
--
N
G
K
K
----
T
N
I
T
V
E
V
E
K
Q
G
N
----
T
F
--
T
V
---
K
R
-
I
T
E
T
V
G
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
SP3
55.51
12%
72
- C8 -
-
1PCH
-
?
?:
[1-88]
---------------------------------------------------------------------A
K
F
S
A
I
ITDKVGLH
A
R
P
A
S
V
L
A
K
E
A
S
K
F
S
-------
S
--
N
I
T
I
I
-------------
A
-
N
E
K
---
Q
G
N
L
K
-
S
I
M
N
--
V
M
A
--
M
A
I
K
----
T
G
T
E
I
T
I
Q
A
D
G
N
----
D
A
--
D
Q
---
A
I
-
Q
A
I
K
Q
T
M
I
D
T
-
A
L
I
-------
Q
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
43
Fugue
55.45
22%
-38
* C10 *
-
5U6Z
-
?
A:
[2-68]
-----------------------------------------------------------------------------------N
A
Q
T
A
F
W
K
S
L
L
K
G
P
P
---------------
P
P
-----
P
N
----
C
-
K
G
H
---
S
-
E
P
C
-
V
L
R
T
--
V
K
K
--
A
G
P
N
----
C
G
R
Q
F
Y
V
C
A
R
P
E
----
G
H
--
S
S
---
N
P
-
Q
A
R
C
-----------------
N
F
F
L
W
---
L
T
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
46
Fugue
53.86
24%
-
- C9 -
-
4R3Z
-
SYRC_HUMAN
B:
[2-660]
DV
L
V
S
E
C
S
A
R
L
L
Q
Q
E
E
E
I
K
S
L
T
A
E
I
D
R
LKNCGCLGASPNLE
Q
L
Q
E
E
N
L
K
L
K
Y
R
L
N
I
L
R
K
S
L
Q
A
E
R
N
K
PTKNMIN
I
I
S
R
L
Q
E
V
F
G
H
A
I
K
A
A
Y
P
D
L
E
N
P
P
-------
L
--
L
V
T
-
P
S
Q
-----
Q
A
----
K
-
F
G
D
---
Y
-
Q
C
N
-
S
A
M
G
--
I
S
Q
--
M
L
K
T
----
K
E
Q
K
V
N
P
R
E
I
A
E
----
N
I
T
-
K
H
---
L
P
-
D
N
E
C
I
E
K
V
E
I
-
A
G
P
--------
G
F
I
N
---
V
H
L
R
K
D
F
V
S
E
Q
L
T
S
L
L
VNGVQLPALGEN
K
K
V
I
V
D
F
SSPNIAKEMH
V
G
H
L
R
S
T
I
I
G
E
S
I
S
R
L
F
E
F
A
GYD
V
L
R
L
NHVGDWGT
Q
F
G
M
L
I
A
H
L
Q
D
K
FPDYLTVSPPIGD
L
Q
V
F
Y
K
E
S
K
K
R
F
DTE
E
E
F
K
K
R
A
Y
Q
C
V
V
L
L
Q
G
KN
P
D
I
T
K
A
W
K
L
I
C
D
V
S
R
Q
E
L
N
K
I
Y
D
A
L
D
V
S
L
I
E
R
G
ESFYQDR
M
N
D
I
V
K
E
F
E
D
R
GF
V
Q
V
D
DG
R
K
I
V
F
V
PGCS
I
P
L
T
IVKSDGGYT
Y
D
T
S
D
L
A
A
I
K
Q
R
L
FEEKAD
M
I
I
Y
V
V
D
NGQ
S
V
H
F
Q
T
I
F
A
A
A
Q
M
I
GWYDPKVTRVFHA
G
F
G
V
V
L
G
EDKKKFKTRSGETVR
L
M
D
L
L
G
E
G
L
K
R
S
M
D
K
L
K
E
KERDKVLTAE
E
L
N
A
A
Q
T
S
V
A
Y
G
C
I
K
Y
A
DLSHNRLNDYIFS
F
D
K
M
L
DDRGNTA
A
Y
L
L
Y
A
F
T
R
I
R
S
I
A
R
L
A
NID
E
E
M
L
Q
K
A
A
R
E
T
K
I
L
L
DH
E
K
E
W
K
L
G
R
C
I
L
R
F
P
E
I
L
Q
K
I
L
D
DLFL
H
T
L
C
D
Y
I
Y
E
L
A
T
A
F
T
E
F
Y
DSCYCVEKDRQTGKILKVN
M
W
R
M
L
L
C
E
A
V
A
A
V
M
A
K
G
F
D
I
L
G
I
K
P
V
Q
RM
40
Fugue
53.54
14%
12
* C8 *
-
1AF7
1
?
?:
[82-274]
---------------------------------------------------------------------------
N
L
T
A
F
FREA
H
H
F
P
I
L
A
E
H
A
R
R
R
H
-------
G
--
E
Y
R
V
W
S
A
-----
A
A
----
S
-
T
G
E
---
E
-
P
Y
S
-
I
A
I
T
--
L
A
D
--
A
L
G
M
----
A
P
G
R
W
K
V
F
A
S
D
I
----
D
T
--
E
V
---
L
E
-
K
A
R
S
--------------------------
G
I
Y
RLSELKTLS
P
Q
Q
L
Q
R
Y
F
M
R
G
T
G
PHEG
L
V
R
V
R
Q
E
L
A
N
Y
V
E
F
S
S
V
N
LLEKQYNVPGPFDAIFCRNVMIYFD
K
T
T
Q
E
D
I
L
R
R
F
VPLLKPD
G
L
L
F
A
G
HSENFSNLVRE
F
S
L
R
G
QTVYALS-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
53.38
17%
-139
- C8 -
0.36
1PTF
-
PTHP_ENTFA
A:
[18-64]
-------------------------------------------------------------------------------------
P
A
T
L
L
V
Q
T
A
S
K
F
N
-------
S
--
D
I
N
L
E
Y
K
-----
G
--------
K
S
---
V
-
N
L
K
-
S
I
M
G
--
V
M
S
--
L
G
V
G
----
Q
G
S
D
V
T
I
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
53.27
15%
-123
- C8 -
0.28
3LE1
-
?
A:
[19-64]
--------------------------------------------------------------------------------------
A
A
L
F
V
Q
T
A
S
K
F
S
-------
S
--
Q
I
W
V
E
K
D
-------------
N
K
K
---
V
-
N
A
K
-
S
I
M
G
--
I
M
S
--
L
G
V
S
----
Q
G
N
V
V
K
L
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
38
Fugue
52.54
13%
-60
- C10 -
-
1LDJ
-
RBX1_HUMAN
B:
[1-88]
------------------------------------------------------------------------------------
K
K
R
F
E
V
K
K
W
N
A
V
A
L
-------
W
--
A
W
D
I
V
V
D
-----
N
C
----
A
-
I
C
R
---
N
-
H
I
M
-
D
L
C
I
--
E
C
Q
--
A
N
Q
A
S
A
T
S
E
E
C
T
V
A
W
G
V
C
N
H
----
A
F
H
F
H
C
---
I
S
-
R
W
L
K
T
R
Q
V
C
P
-
L
D
N
-------
R
E
W
E
F
---
Q
K
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
SP3
52.54
16%
73
- C8 -
0.44
1HYU
-
AHPF_SALTY
A:
[1-102]
--------------------------------------------------------------------------------MLD
T
N
M
K
T
Q
L
R
A
Y
L
E
K
L
T
-------
K
--
P
V
E
L
I
A
-------
T
----
L
-
D
D
S
---
A
-
K
S
A
-
E
I
K
E
--
L
L
A
E
I
A
E
L
S
----
D
K
V
T
F
K
E
D
N
T
L
P
VRKP
S
F
--
L
I
---
T
N
-
P
G
S
Q
Q
G
P
R
F
A
-
G
S
P
-------
L
G
H
E
F
---
T
S
L
V
L
A
L
L
W
T
G
G
H
P
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
51.68
18%
-136
- C8 -
0.39
1PCH
-
PTHP_MYCCT
A:
[18-66]
--------------------------------------------------------------------------------------
A
S
V
L
A
K
E
A
S
K
F
S
-------
S
--
N
I
T
I
I
A
N
-------------
E
K
Q
---
G
-
N
L
K
-
S
I
M
N
--
V
M
A
--
M
A
I
K
----
T
G
T
E
I
T
I
Q
A
D
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
51.36
14%
-135
- C13 -
-
2MM0
-
?
A:
[2-58]
---------------------------------------------------------------------------------------------------------
C
--
V
A
N
I
L
N
I
-----
N
-----------------
E
-
A
V
I
A
--
T
G
C
--
V
P
A
G
----
G
E
L
R
I
F
V
G
-
S
S
H
----
S
Y
--
L
I
---
K
A
-
T
S
S
C
G
L
S
L
T
N
Q
V
F
I
-------
N
G
E
S
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
51.34
20%
61
- C13 -
-
1FQT
3
BPHF_PARXL
A:
[4-112]
---------------------------------------------------------------------------------M
K
F
T
R
V
C
D
R
R
D
V
P
E
G
E
A
-------
L
--
K
V
E
S
G
G
T
-----
S
V
A
I
F
N
V
-
D
G
E
L
F
A
T
-
Q
D
R
C
T
H
G
D
WS
L
S
D
--
G
G
Y
L
----
E
G
D
V
V
E
C
S
L
H
M
G
----
K
F
--
C
V
---
R
T
-
G
K
V
K
S
P
P
P
C
E
-
A
L
K
I
F
P
I
R
I
E
D
N
D
V
L
V
DF
E
A
G
Y
L
A
P----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
44
Fugue
50.81
15%
49
- C13 -
-
3MCR
1
?
A:
[59-212]
---------------------------PAAAQRPYSDPSDPRTAY
F
D
E
V
A
D
A
L
E
R
S
L
K
E
I
GTP
Y
D
T
A
I
S
R
V
V
V
D
RG
E
I
T
F
HVQR
E
H
L
L
D
V
A
T
R
L
R
D
D
P
ALRFELC
L
--
G
V
T
G
V
H
Y
-----
P
E
----
D
-
E
G
N
-----
E
L
H
-
A
V
Y
A
--
L
R
S
--
I
T
H
N
----
Y
E
I
R
L
E
V
S
C
P
D
S
----
D
P
--
H
I
---
P
S
-
I
V
S
V
Y
P
T
N
D
W
-
H
E
R
-------
E
A
W
D
F
---
F
G
I
I
FDGHPALT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
Fugue
50.36
21%
87
- C13 -
-
5A6W
4
?
C:
[11-93]
------------------------------------------------------------------------------------
R
A
I
D
L
S
R
E
R
D
P
N
F
F
-------
D
--
H
P
G
I
P
V
P
E
C
F
W
F
M
F
----
K
-
N
N
-------
V
R
-
Q
D
A
G
--
T
C
Y
--
S
S
W
K
----
M
D
M
K
V
G
----
P
N
----
W
V
--
H
I
---
K
S
-
D
D
N
C
N
--
L
S
G
-
D
F
P
-------
P
G
W
I
V
---
L
G
K
K
R
PGF---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(1 SA)
.........10........20........30........40........50........60........70........80..
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
K
Q
I
A
Q
L
K
E
Y
LRNPP
C
K
V
T
I
YAPPLKQ
G
Q
T
Q
L
R
T
V
M
G
F
ASAGKNEDV
P
V
K
I
ASTG
H
T
Y
Q
CRTDATCEE
P
V
CHGLPNGWTYEGVY
47
100.00
100%
0
- C- -
M047
-
A:
[2-51]
-
Q
I
A
Q
L
K
E
Y
L
R
N
P
P
C
K
V
T
I
Y
A
P
P
L
K
Q
G
Q
T
Q
L
R
T
V
M
G
F
A
S
A
G
K
N
E
D
V
P
V
K
I
A
--------------------------------