@TOME V2.3
(Mar 2018)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VKJ0: (2017-10-26 )
MTDINDYEDAEDSAVDEDEAKAAESGAADEEAGNLTDADLAEAETLTVTAKQKQRQALEDEVAAFLARGGRITEVPPDEHSDR
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...---------......10........20........-----30----...----.....40..-.----------------------...-----------..-50.......-.60..--------......---70-....---.....80..----------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MTD---------INDYEDAEDSAVD
E
D
E
A
KAAESGAAD-----EE----AGN----LT
D
A
D
LAEA-
E
----------------------
T
L
T
-----------
V
T
-
A
K
Q
K
Q
R
Q
A
L
-
E
D
E
V
A
--------
A
F
L
ARG---G--
R
I
TE---VPPDEHSDR----------------------------------------------------------------------------------------------------------------------------------------------------------
8
Fugue
72.49
22%
49
- C1 -
-
4G6V
-
CDII2_BURP2
B:
[2-104]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
D
---------
L
F
C
Y
L
S
I
D
R
G
A
A
E
S
D
L
N
K
I
R
S
N
H
S
E
L
-----
F
E
GK
F
L
I
S
P
----
V
R
D
A
D
F
S
L
K
-
E
----------------------
I
A
A
E
H
GLVAE
S
F
F
L
V
S
-
L
N
D
K
N
S
A
D
L
-
I
P
I
V
S
--------
K
I
L
V
D
G
F
NG
G
--
A
I
L
I
---
L
Q
D
N
E
Y
R
R
T
SL--------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
70.58
37%
-16
- C1 -
-
5IK2
-
?
G:
[232-279]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
S
E
F
G
A
R
M
-----
T
A
----
M
G
N
----
A
T
D
N
A
T
E
M
L
-
E
----------------------
T
L
T
-----------
L
Q
-
F
N
R
A
R
Q
A
A
I
-
T
Q
E
I
A
--------
E
I
V
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
70.25
37%
-51
- C1 -
-
5HKK
-
?
G:
[233-280]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
S
E
F
G
A
R
M
-----
T
A
----
M
G
N
----
A
T
D
N
A
T
E
M
L
-
E
----------------------
T
L
T
-----------
L
Q
-
F
N
R
A
R
Q
A
A
I
-
T
Q
E
I
A
--------
E
I
V
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
Fugue
53.92
17%
4
- C1 -
-
3WX4
-
ARN_BPT4
A:
[1-98]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MII
D
S
Q
S
V
V
Q
Y
T
F
K
---------
I
D
I
L
E
K
L
Y
K
F
L
P
N
L
Y
H
S
I
V
N
E
L
V
E
E
L
-----
H
L
----
E
N
N
D
F
L
I
G
T
Y
K
D
L
S
K
A
-
G
----------------------
Y
F
Y
-----------
V
I
P
A
P
G
K
N
I
D
D
V
-
L
K
T
I
M
--------
I
Y
V
H
D
Y
---
E
---
I
E
D
---
Y
F
E
L
E
H
H
H
H
----------------------------------------------------------------------------------------------------------------------------------------------------------
7
Fugue
53.03
15%
-33
- C1 -
-
2JPQ
-
Y2129_VIBPA
A:
[1-83]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
I
---------
T
S
K
Y
T
D
E
Q
V
E
K
I
L
A
E
V
A
L
V
L
E
K
H
A
A
S
-----
P
E
----
L
T
L
----
M
I
A
G
N
I
A
T
N
-
V
----------------------
L
N
Q
-----------
R
V
-
A
A
S
Q
R
K
L
I
A
-
E
K
F
A
Q
--------
A
L
M
S
S
L
---
E
--
T
P
K
T
---
H
L
E
H
H
H
H
H
H
----------------------------------------------------------------------------------------------------------------------------------------------------------
5
Fugue
52.14
18%
62
- C1 -
-
5LQ4
2
?
A:
[1-467]
DL
F
T
L
S
F
S
PD
L
S
I
A
S
EAE
Q
L
T
L
Q
S
KD
D
R
L
I
L
E
HPQ
P
G
L
R
T
A
L
E
Q
L
K
Q
GNLT
L
A
Q
L
T
E
L
V
S
E
Q
DG
V
E
A
G
I
T
F
A
S
E
L
E
K
L
V
D
L
GW
I
C
H
S
VLP
L
I
T
A
I
P
IAKD
Y
E
L
N
V
P
D
SSWQT
T
A
I
A
L
S
RF
A
F
L
H
Q
D
LQ
Q
L
V
L
E
S
PRSK
S
K
L
V
I
LDW
R
V
G
A
V
I
A
K
L
A
Q
SDRGFIFATSA
D
S
L
L
A
DLSLE
L
E
E
L
K
R
L
F
A
L
L
I
A
T
QMMDLEPEDETITQWK
F
H
N
L
L
F
H
H
Y
T
R
L
L
P
---------
V
F
E
H
R
D
R
Y
P
Y
V
K
P
V
I
S
T
Q
A
I
P
L
V
K
P
D
-----
L
T
----
A
L
A
----
T
T
D
M
T
L
T
E
A
-
I
----------------------
E
T
R
-----------
R
S
-
I
R
E
Y
S
D
Q
P
I
T
L
A
Q
L
G
--------
E
F
L
Y
R
C
---
A
--
R
V
K
A
---
V
Y
T
L
P
E
D
P
M
QV
G
E
S
T
T
R
P
Y
P
S
G
GALYE
L
E
I
Y
P
LVHQCGDL
A
A
G
L
Y
H
Y
Q
PLSH
T
L
H
P
VADWT
P
E
V
E
S
L
V
Y
D
A
W
R
A
T
GQQSIPQ
I
V
L
I
I
T
A
RFGRLFWKYHDI
A
Y
S
L
I
L
K
H
V
G
V
L
Y
Q
T
F
Y
L
V
A
T
A
M
Q
L
A
P
S
A
I
GAGN
T
T
K
F
C
Q
I
A
GLNPDEEASV
G
E
F
S
L
G
A
A
K
P
22
HHSearch
51.45
27%
-211
- C1 -
-
5FMR
-
?
B:
[71-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
F
T
A
P
E
-
V
D
M
L
K
--------
K
F
V
K
N
G
---
G
--
S
I
L
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
51.18
27%
-227
- C1 -
-
5FMR
-
?
C:
[71-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
F
T
A
P
E
-
V
D
M
L
K
--------
K
F
V
K
N
G
---
G
--
S
I
L
I
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
50.18
10%
-178
- C1 -
-
2I5I
-
YDJC_ENTFA
A:
[98-128]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
-----------
K
V
-
N
L
E
E
V
Y
N
E
W
-
D
A
Q
I
I
--------
S
F
M
K
S
G
---
R
--
R
P
D
H
---
I
D
S
----------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
49.85
27%
-224
- C1 -
-
5FMS
-
IFT52_MOUSE
C:
[64-110]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
F
T
A
A
E
-
F
E
V
L
K
--------
K
Y
L
D
S
G
---
G
--
D
I
L
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
48.74
37%
-
- C- -
-
2QE7
-
?
G:
[233-266]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
A
S
E
F
G
A
R
M
-----
T
A
----
M
G
N
----
A
T
D
N
A
T
E
M
L
-
E
----------------------
T
L
T
-----------
L
Q
-
F
N
R
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
Fugue
47.19
15%
97
- C1 -
-
2K2B
-
MEC4_CAEEL
A:
[1-111]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
S
W
M
Q
N
---------
L
K
N
Y
Q
H
L
R
D
P
S
E
Y
M
S
Q
V
Y
G
D
P
L
A
Y
L
Q
-----
E
T
----
T
K
F
----
V
T
E
R
E
Y
Y
E
D
-
F
GYGECFNSTESEVQCELIT
G
E
F
D
P
K
-----------
L
L
-
P
Y
D
K
R
L
A
W
H
-
F
K
E
F
C
--------
Y
K
T
S
A
H
---
G
I
P
M
I
G
E
---
A
P
L
E
H
H
H
H
H
H---------------------------------------------------------------------------------------------------------------------------------------------------------
11
Fugue
46.77
19%
139
- C1 -
-
1V74
1
A:
[1-107]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
D
---------
P
L
D
S
G
R
F
S
R
K
Q
L
D
K
K
Y
K
H
A
G
D
F
G
I
S
D
TKKN
R
E
T
----
L
T
K
----
F
R
D
A
I
E
E
H
L
-
S
----------------------
D
K
D
-----------
T
V
-
E
K
G
T
Y
R
R
E
K
-
G
S
K
V
Y
F
N
PNTM
N
V
V
I
I
K
S
N
---
G
--
E
F
L
S
G
W
K
I
N
P
D
A
D
N
G
R
I
Y
L
E
TGEL--------------------------------------------------------------------------------------------------------------------------------------------------
30
HHSearch
46.20
19%
-170
* C1 *
-
4YFT
-
DBHB_ECOLI
A:
[17-57]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-----------
K
A
-
A
A
G
R
A
L
D
A
I
-
I
A
S
V
T
--------
E
S
L
K
E
G
---
D
--
D
V
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
45.55
36%
122
- C1 -
-
1T11
-
TIG_VIBCH
A:
[114-165]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
V
E
L
K
G
L
E
N
I
A
V
E
-----
K
P
----
A
A
-------
D
A
D
V
A
E
M
L
E
----------------------
T
L
------------------
R
K
Q
Q
A
T
-
W
K
E
V
D
--------
E
A
A
E
N
G
---
K
--
R
V
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
45.20
27%
-168
- C1 -
-
5FMS
-
IFT52_MOUSE
A:
[64-99]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
F
T
A
A
E
-
F
E
V
L
K
--------
K
Y
L
D
S
G
---
G
--
D
I
L
V
----------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
44.00
10%
-164
- C1 -
-
3RHT
-
?
D:
[64-83]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
A
Q
A
-
I
D
Q
L
V
--------
T
M
V
K
A
G
---
C
--
G
L
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
Fugue
41.63
14%
117
- C1 -
-
2KRX
-
?
A:
[1-94]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
P
D
PLMYQQDNF
V
V
L
E
T
N
Q
P
E
Q
F
L
T
T
I
E
L
L
E
K
L
K
G
E
L
E
-----
K
I
----
S
F
S
----
D
L
P
L
E
L
Q
K
L
-
D
----------------------
S
L
P
-----------
A
Q
-
A
Q
H
L
I
D
T
S
C
-
E
L
D
V
G
--------
A
G
K
Y
L
Q
---
W
--
Y
A
V
R
---
L
E
K
L
E
H
H
H
H
HH--------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
40.88
17%
-161
- C1 -
-
3SOZ
-
?
C:
[95-117]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
I
P
D
A
-
L
Q
L
I
A
--------
D
Y
V
A
E
G
---
G
--
G
L
L
M
---
I
------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
40.81
11%
-117
- C1 -
-
4YF0
-
DBHA_ECOLI
B:
[18-46]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
-----------
K
T
-
Q
A
K
A
A
L
E
S
T
-
L
A
A
I
T
--------
E
S
L
K
K
G
---
D
--
A
L
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------