@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VSR3: (2017-12-10 )
MSTQPMIEKLIEAHLDFLDEQFAQTQVIQQEFEQFYHWLGSRQLQHLWTFEQVQQLIQKQILDTPASDFLIEQIAEHIRFALIHPTNDTATVEDVIPVLTIDRIAQYVASKEEHRKKLIKTIVNNPAFSALLTQLIQQTMHDYLDESMTKRVPGVGRFMKMGKSVLETVTDSNLDDTINHYLQKNILKLSQMSKRVLNQHFDNDKLYHFQANVWHKVKTSPLSVLKNYIEVQDLTRTVGLGHEIWDHIRQTDYLKQQVHDGIYTWYVRNQERNFDLLLRDLNIDENLVKHELTELLVPVLQQLVTTGHLRRRARVYLEKFYYSEKALEILNNKGA
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------.....------....10......-----..20...--------------.....30........----40-........50--..-------.....------.60.....-...70--------....---.....80...----.....--90........100.......110------........120.......-130-........140......--.150...-....160..--------.....170.......180.----....------..190...-....200.-.-.....210------------......-.220.........230..----...-...240..-...----------..250.......260--------.......270.--------.-.....280--...-----..-....290.......----300......-.310.....--..---320.......330...-----------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------MS
T
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-
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--
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-------
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I
Q
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ILDTP
A
-
S
D
F
L
---------
I
E
Q
I
---
A
E
HI
R
F
A
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I
H----PTNDT--A
T
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VI
P
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-------
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VNNP
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-
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T
M
H
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--
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RVPG
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-
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--------
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L
E
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VTDSN
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L
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----
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-
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HFDN-D-
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KVK-T
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Q
V
HDG
I
--------
Y
T
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RNQER
N
--------
F
-
D
L
L
L
R
D----LNI-----
D
E
-
N
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----
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-
L
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--
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---
F
YY
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A
L
E
I
LNNKGA-----------------------
29
Fugue
54.49
15%
42
- C2 -
-
5GNR
1
MFN1_HUMAN
A:
[4-416]
----------------------------------------------------------------------------PVS
P
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DKVL
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--------
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N
--------
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C
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I
-----
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-
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T
K
Q
FLPS
33
Fugue
52.55
17%
-79
- C2 -
-
4XGC
-
ORC2_DROME
B:
[62-352]
---------------------------------------------------------------------------------------
E
G
------
S
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M
E
E
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Y
-----
F
P
K
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M
C
I
--------------
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---
E
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Y
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----
G
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-
K
--------
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--
Q
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-------
L
Q
S
F
H
------
R
E
V
L
H
K
Q
T
--------------------------
V
L
V
V
N
----
G
F
F
P
S
--
L
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K
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M
L
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A
-------
N
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--
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A
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M
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--
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E
F
A
-
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-
A
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L
A
R
I
-------------------------------
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H
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A
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I
D
H
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P
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W
D
---------
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Y
T
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E
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T
A
----
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N
-
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--
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A
-
L
S
S
----------
M
R
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F
S
S
L
T
T
N
S
R
G
I
--------
Y
M
L
I
V
K
Y
Q
L
K
N
KGNATGMP
F
-
R
D
L
Y
S
S
----
C
R
E
A
FLVS
S
D
-
L
A
L
R
A
Q
L
T
E
F
L
D
-------
H
K
L
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K
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K
R
-
S
S
E
Q
L
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I
P
I
----------
D
G
A
L
L
Q
Q
F
L
E
E
Q
E
-----------------------
27
Fugue
52.09
13%
-19
- C2 -
-
2JAK
-
2A5G_HUMAN
A:
[30-372]
------------------------------------------------------------------------------------
I
R
D
V
P
ADQE
K
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Q
C
C
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D
FVSD
P
L
S
D
L
K
W
--------------
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E
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K
R
A
A
L
S
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M
V
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Y
I
----
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H
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N
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P
--
E
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-------
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H
M
F
A
------
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M
F
R
T
L
P
-
P
P
T
L
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W
P
H
---
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V
---
Y
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F
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R
F
L
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----
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D
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--
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------
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--
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Y
--
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A
Y
C
V
V
Q
------------
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D
S
-
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E
P
V
V
M
A
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----------------------------------------------------------
Y
W
P
K
T
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K
E
--------
V
-
M
F
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N
E
L
----
E
E
I
-----
L
D
-
V
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E
P
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K
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A
K
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P
I
MFP---------------
34
Fugue
51.57
15%
13
- C2 -
-
4KK0
-
TSC1_SCHPO
A:
[2-431]
---------------------------------------------------------------------
P
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E
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Y
-----
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Q
N
P
T
N
--------------
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Q
K
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PFNN
T
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R
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--
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V
-------
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PTQL
K
P
V
F
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D
L
---
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L
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Y
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----
H
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G
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R
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A
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Q
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--
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P
--------
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A
E
FDTS
P
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Y
A
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Y
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N
--------
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E
F
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----
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E
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L
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L
NAV-------------
35
Fugue
46.64
13%
-10
- C2 -
-
4D50
4
DOHH_HUMAN
A:
[1-290]
---------------------------------------------------------------------------------------
G
P
------
L
G
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M
V
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E
Q
E
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A
-----
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G
Q
T
L
V
D
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--
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----
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L
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G
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--
G
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-------
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A
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A
F
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D
D
---
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A
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H
E
L
---
A
Y
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M
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A
--
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A
I
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M
L
V
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Q
------------------
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T
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E
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-
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K
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Y
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------
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A
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C
Q
L
A
V
R
--------
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L
E
W
L
Q
Q
H
G
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A
A
G
P
Y
L
S
----
V
D
P
A
PPAEER
D
V
G
R
L
R
E
A
-
L
L
D
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S
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P
L
-
F
-
E
R
Y
R
A
M
F
A
------------
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A
G
G
-
E
E
--
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L
A
L
A
E
G
L
H
---------
C
G
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S
A
L
F
R
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V
-
G
Y
V
----------
L
G
Q
L
Q
H
----------------------
E
A
A
V
P
Q
--------
L
-
A
A
A
L
A
R
----
C
T
------
E
N
-
P
M
V
R
H
E
C
A
E
A
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G
A
I
----
A
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P
A
C
L
A
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L
-
Q
A
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A
D
D
P
E
R
--
V
V
---
R
E
S
C
E
V
A
L
D
M
Y
E
H
E
T
G
-----------------------
28
Fugue
44.76
19%
7
- C2 -
-
4K70
1
?
A:
[2-483]
PG
S
M
E
A
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A
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E
EADHAV
A
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E
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F
M
AA
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E
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A
G
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R
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L
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A
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A
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R
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A
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R
A
Y
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TGT
C
E
A
A
V
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A
E
N
L
A
G
L
A
L
W
RLRHDWD
E
G
T
A
P
------
L
L
E
L
L
G
V
V
N
G
D
D
-----
T
T
A
A
L
T
E
A
GLRTSAEFG
P
D
A
M
F
R
L
V
S
E
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C
A
A
F
D
E
A
L
A---
G
A
-
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A
D
D
V
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A
A
P
--
R
V
V
P
PEQTA
R
A
L
V
Q
------
P
R
F
A
T
L
Y
D
-
M
D
F
V
Q
D
G
------
L
R
Y
V
---
A
Q
H
T
N
W
A
L
P
L
----
A
L
A
V
R
--
Q
M
Q
N
E
G
L
K
P
L
T
R
A
L
F
A
L
T
I
A
D
E
-------
F
F
H
D
R
Q
-------
N
P
T
L
R
-
E
Q
--
F
A
E
A
A
R
A
-----
V
D
E
A
A
--
L
V
P
V
G
E
V
-
N
A
T
P
R
T
A
V
E
--------
V
R
V
S
A
A
L
A
H
G
D
A
Y
V
R
E
L
R
P
----
G
T
V
A
------
R
R
L
R
T
D
Q
G
-
V
L
A
L
L
D
P
G
-
A
-
Q
A
V
H
V
A
A
A
A
DLDHTQVDA
T
G
V
W
E
A
V
Q
-
A
S
AS
P
L
Q
V
V
E
A
L
V
T
A
G
F
T
----
R
R
H
-
C
D
L
L
E
R
A
V
-
L
D
R
APRLT
D
A
Q
R
A
V
G
C
T
A
V
V
G
G
V
V
H
R
L
L
DDYGPG
L
D
Y
V
R
A
Y
T
D
V
A
D
T
--------
L
-
E
P
L
Y
G
D
VTAA
L
G
L
-----
P
E
-
K
G
V
E
H
V
V
R
H
C
M
A
P
R
PPT
E
H
V
G
A
A
R
A
A
L
-
L
R
E
V
A
A
A
E
R
--
R
A
---
G
L
A
H
S
A
A
R
E
A
L
N
T
W
L
A
F
R
A
Q
S
R
WGL--------------
20
HHSearch
35.77
15%
-98
- C1 -
-
3EYI
2
B:
[12-58]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
D
I
--------
Y
R
F
L
K
D
N
G
P
Q
R
--------
A
-
L
V
I
A
Q
A
----
L
G
M
-----
R
T
A
K
D
V
--------
N
R
D
----
L
Y
R
M
K
S
R
H
L
-
L
D
M
D
---------------------------------------------------
8
PsiBlast_PDB
34.75
22%
29
- C1 -
-
4N7T
1
DEOB_STRMU
A:
[106-257]
----------------------------------------------------------------------------------------------------------------------------------------
I
T
E
P
F
D
T
F
W
N
G
F
----
P
E
-
E
I
I
S
K
I
E
K
F
S
GR
K
V
-------
I
R
E
A
N
------
K
P
Y
S
G
T
A
V
I
D
D
F
G
---------
P
R
Q
M
E
T-
G
E
L
I
I
Y
T
S
A
D
----
P
V
L
Q
I
--
A
A
H
E
D
V
I
P
L
D
E
L
Y
R
I
C
E
Y
A
R
S
I
-------
T
L
E
R
P
A
L
L
G
R
I
I
A
R
P
Y
V
G
-
K
P
--
R
N
F
T
R
T
A
N
R
H
D
Y
---
A
L
--
S
P
F
A
P
T
V
---
L
N
K
L
A
D
A
--------
G
V
S
T
Y
A
V
G
K
I
N
D
I
F
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
34.65
18%
-109
* C1 *
-
4KA4
2
E:
[12-61]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
Q
R
E
E
D
I
--------
Y
R
F
L
K
D
N
G
P
Q
R
--------
A
-
L
V
I
A
Q
A
----
L
G
M
-----
R
T
A
K
D
V
--------
N
R
D
----
L
Y
R
M
K
S
R
H
L
-
L
D
M
D
---------------------------------------------------
23
HHSearch
33.11
13%
-112
- C1 -
-
2L4M
-
ZBP1_HUMAN
A:
[110-156]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
D
I
--------
Y
R
F
L
K
D
N
G
P
Q
R
--------
A
-
L
V
I
A
Q
A
----
L
G
M
-----
R
T
A
K
D
--------
V
N
R
D
----
L
Y
R
M
K
S
R
H
L
-
L
D
M
D
---------------------------------------------------
21
HHSearch
32.90
18%
-106
- C1 -
-
4KA4
2
ZBP1_HUMAN
A:
[10-61]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
S
Q
Q
R
E
E
D
I
--------
Y
R
F
L
K
D
N
G
P
Q
R
--------
A
-
L
V
I
A
Q
A
----
L
G
M
-----
R
T
A
K
D
V
--------
N
R
D
----
L
Y
R
M
K
S
R
H
L
-
L
D
M
D
---------------------------------------------------
9
PsiBlast_PDB
32.70
22%
37
- C1 -
-
3M7V
-
DEOB_STRMU
A:
[106-257]
----------------------------------------------------------------------------------------------------------------------------------------
I
T
E
P
F
D
T
F
W
N
G
F
----
P
E
-
E
I
I
S
K
I
E
K
F
S
GR
K
V
-------
I
R
E
A
N
------
K
P
Y
S
G
T
A
V
I
D
D
F
G
---------
P
R
Q
M
E
T-
G
E
L
I
I
Y
T
S
A
D
----
P
V
L
Q
I
--
A
A
H
E
D
V
I
P
L
D
E
L
Y
R
I
C
E
Y
A
R
S
I
-------
T
L
E
R
P
A
L
L
G
R
I
I
A
R
P
Y
V
G
-
K
P
--
R
N
F
T
R
T
A
N
R
H
D
Y
---
A
L
--
S
P
F
A
P
T
V
---
L
N
K
L
A
D
A
--------
G
V
S
T
Y
A
V
G
K
I
N
D
I
F
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
PsiBlast_PDB
31.33
29%
-286
- C1 -
-
4AFX
-
ZPI_HUMAN
A:
[276-330]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
-
L
V
V
L
M
E
K
M
-
G
D
H
----------
L
A
L
E
D
Y
L
T
T
---
D
L
V
--------
E
T
W
L
R
N
M
K
T
R
N
--------
M
-
E
V
F
F
P
K
----
F
K
L
-----
D
Q
-
K
Y
E
M
H
E
L
----------------------------------------------------------------------------
15
PsiBlast_PDB
31.17
29%
-223
- C1 -
-
4AJU
-
?
A:
[276-330]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
-
L
V
V
L
M
E
K
M
--
D
H
----------
L
A
L
E
D
Y
L
T
T
---
D
L
V
--------
E
T
W
L
R
N
M
K
T
R
N
--------
M
-
E
V
F
F
P
K
----
F
K
L
-----
D
Q
-
K
Y
E
M
H
E
L
----------------------------------------------------------------------------
11
PsiBlast_PDB
27.16
38%
-175
- C1 -
-
2LB9
1
?
A:
[31-61]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
----
D
Q
I
L
R
--
A
T
V
E
E
V
R
A
F
L
G
T
D
R
V
K
V
Y
R
F
D
P
-------
E
G
H
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
27.15
29%
-194
- C1 -
-
3F1S
-
ZPI_HUMAN
A:
[238-292]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
-
L
V
V
L
M
E
K
M
-
G
D
H
----------
L
A
L
E
D
Y
L
T
T
---
D
L
V
--------
E
T
W
L
R
N
M
K
T
R
N
--------
M
-
E
V
F
F
P
K
----
F
K
L
-----
D
Q
-
K
Y
E
M
H
E
L
----------------------------------------------------------------------------
25
HHSearch
26.87
12%
-155
- C1 -
-
2C7L
2
PHEB_MASLA
B:
[84-142]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
D
L
-
G
F
I
----------
L
R
---
Y
V
T
Y
S
V
L
A
G
D
--------
T
S
V
M
D
D
R
C
L
N
G
--------
L
-
R
E
T
Y
Q
A
----
L
G
T
-----
P
G
-
D
A
V
A
S
G
I
K
K
M
K
E
A
A
----
L
K
I
A
-------------------------------------------------------------
1
PsiBlast_PDB
26.86
29%
41
- C1 -
-
2L7B
-
APOE_HUMAN
A:
[1-88]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
------------
V
E
Q
A
V
E
-
T
E
--
P
E
P
E
L
R
Q
Q
T
E
W
-
Q
S
----
G
Q
R
W
E
L
A
L
G
R
-
F
-
W
D
Y
----------
L
R
W
V
Q
T
L
S
E
Q
V
Q
E
E
L
--------
L
S
S
Q
V
T
Q
E
L
R
A
--------
L
M
D
E
T
M
K
E
----
L
K
A
----------
Y
K
S
E
L
E
E
Q
L
T
P
V
----
A
E
E
--------------------------------------------------------------
13
PsiBlast_PDB
26.57
29%
-205
- C1 -
-
3H5C
-
ZPI_HUMAN
A:
[276-330]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
M
-
L
V
V
L
M
E
K
M
-
G
D
H
----------
L
A
L
E
D
Y
L
T
T
---
D
L
V
--------
E
T
W
L
R
N
M
K
T
R
N
--------
M
-
E
V
F
F
P
K
----
F
K
L
-----
D
Q
-
K
Y
E
M
H
E
L
----------------------------------------------------------------------------
26
HHSearch
25.77
12%
-152
- C1 -
-
2C7K
2
PHEB_MASLA
B:
[84-142]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
D
L
-
G
F
I
----------
L
R
---
Y
V
T
Y
S
V
L
A
G
D
--------
T
S
V
M
D
D
R
C
L
N
G
--------
L
-
R
E
T
Y
Q
A
----
L
G
T
-----
P
G
-
D
A
V
A
S
G
I
K
K
M
K
E
A
A
----
L
K
I
A
-------------------------------------------------------------