@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VTH1: (2017-12-13 )
MKSFKVALAQFSPHIGNIDSNTQKMIEQANQAKKQDADLIIFPELSVIGYPAEDLLLRPNLNKRMQKAFAQLSEVKDIVMVFGFVNQTEDGQRYNSAAVMKDGQVLGVFNKHNLPNYGVFDEKRYFQKGHQHLVFEYLGHKFGVLICEDIWSINTVKQLSQLNVDTVLVLNSSPYEVGKPQHRKQTLSELAKQLHLNTVYVNQVGGQDDLIFDGTSFVSNQNGEIALQAPSFKEDLYIAEFDRDTKLYKVVESAPALETFAEIYQGLVMATRDYVERSGFPGVILGLSGGIDSALTLAIAVDAIGAERVQAVMMPYTYTSQISVEDAAEQARRMGVTFGIAEIHSIVNSFMQTLYPFFGNSPADATEENLQARARGTLLMGLSNKFGNLVLSTGNKSELSVGYCTLYGDMVGGFAVLKDVYKTIVFELAKYRNSLSETPVIPERVITRPPSAELRPDQKDQDSLPAYDVLDAILYAYIEEDLGQADIIAKGFDKEVVEKVIRLVDRNEYKRRQGAIGPRITSRAFSRERRYPIVNGWTAND

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_8(1XNG)
NADE_HELPY
[Raw transfer]



ATP_A_7(1XNG)
NADE_HELPY
[Raw transfer]



AMP_A_9(1NSY)
NADE_BACSU
[Raw transfer]



AMP_A_7(3FIU)
?
[Raw transfer]



DND_B_6(1XNG)
NADE_HELPY
[Raw transfer]



DND_A_5(1XNG)
NADE_HELPY
[Raw transfer]



ADP_A_3(5KHA)
?
[Raw transfer]



ADP_B_6(5KHA)
?
[Raw transfer]
28 HHSearch 91.52100%-113 - C1 -5KHA 2.4 ?
1 PsiBlast_PDB 91.3299%-113 - C1 -5KHA - ? -
21 PsiBlast_CBE 91.0799%-112 - C1 -5KHA 2.5 ?
3 PsiBlast_PDB 65.1440% 10 - C1 -3N05 - ? -
31 HHSearch 62.5643% 12 - C1 -3N05 - ? -
2 PsiBlast_PDB 58.9646% 7 - C1 -4F4H - ? -
6 PsiBlast_PDB 55.2426% -23 - C1 -3SYT - NADE_MYCTU -
33 HHSearch 55.1125% -6 * C1 *3SEQ - NADE_MYCTU -
11 PsiBlast_PDB 55.0926% -32 - C1 -3SZG - NADE_MYCTU -
9 PsiBlast_PDB 54.2926% -18 - C1 -3SEQ - NADE_MYCTU -
10 PsiBlast_PDB 54.0726% -19 - C1 -3SEZ - NADE_MYCTU -
5 PsiBlast_PDB 53.8426% -22 - C1 -3DLA - NADE_MYCTU -
30 HHSearch 52.1825% -14 - C1 -3ILV - ? -
7 PsiBlast_PDB 51.8424% -6 - C1 -3ILV - ? -
51 Fugue 50.9625% 12 - C1 -3DLA - NADE_MYCTU -
8 PsiBlast_PDB 49.5826% - - C1 -3SDB - NADE_MYCTU -
37 HHSearch 49.0535% -78 - C1 -2E18 - NADE_PYRHO -
32 HHSearch 48.9725% - - C1 -3SDB - NADE_MYCTU -
34 HHSearch 47.5326% -84 - C1 -1XNG 7.5 NADE_HELPY
23 PsiBlast_CBE 46.8133% -83 - C1 -2E18 - NADE_PYRHO -