@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ08_V3_1000: (2017-09-12 )
MPVVHAFRASQSGLDAGAMKRSSDSHSPPFFFLSSACLAYRTSPMPSPRFARPELNGIITVRRFQRPQLETEAPIRKGDLKEPLEAVAGRVGLRARCSTSAPSADLCLVDDHELVLMGKLVDKGVYYITGGVCIDAEGSDTSSQSPTAALVSSTACGAAPQPPDITVGWCFDARMLLHRSDMNRSPETPHRLQRAIETLQGCERALDVLPVELLAPFTVHKDSSSGSDLGRAVPPISAANRSQWIPARLATYDEVCSFQDPQVYEHFLKSGAALVNLKSDVYCNDETSSVAVRLSAGAVIDASVAALRGVAASRSGTASSAAGRVHPLVSFCLVRPPGHHCTASQPSGFCLVNNVAIAVQQLRIRHASALPSGPPRIAILDLDVHFGEGTASFVEGACDPASLLYLSLHRYDKRQFYPFDGRGDTAYVGGSRHAASKGSICNVAVHTNGQQPARCEQVISDHLMNSVLEEIFLPRLAEFGPDLVMVSLGFDAAYGDPLGKMAVEGGFASVLSRLKWWCLHDGRTAGLVVVLEGGYNPEAVAQGVLSVALALSLPRTDPLLQRFLEEKSPKVWSDLRQRQERRHREWQQLREERAEEDVGAAPSGLGSELKPAASDEPEQVQEDALLLDRHKRWCAALVAKVQQIHREAMTRER

Atome Classification :

(40 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TSN_A_5(5EEK)
?
[Raw transfer]




N4R_A_10(5G0J)
?
[Raw transfer]




E1Z_A_2(5G0H)
?
[Raw transfer]




5OG_B_6(5EEN)
?
[Raw transfer]




TSN_A_10(5G0G)
?
[Raw transfer]




TSN_B_10(5EEF)
?
[Raw transfer]




TSN_A_4(5EEF)
?
[Raw transfer]




5OK_D_5(5EFB)
?
[Raw transfer]




9RB_A_6(5LI3)
HDAH_PSEAE
[Raw transfer]




TSN_B_17(3C10)
HDAC7_HUMAN
[Raw transfer]




TSN_C_18(3C10)

[Raw transfer]




FMT_B_7(5EEM)
?
[Raw transfer]




SHH_C_18(3C0Z)

[Raw transfer]




9RB_B_10(5LI3)
HDAH_PSEAE
[Raw transfer]




TSN_A_16(3C10)
HDAC7_HUMAN
[Raw transfer]




HA3_A_6(2VQV)
HDAC4_HUMAN
[Raw transfer]




SHH_B_17(3C0Z)
HDAC7_HUMAN
[Raw transfer]




5OJ_A_6(5EF7)
?
[Raw transfer]




FKS_D_6(5EFH)
?
[Raw transfer]




SHH_A_16(3C0Z)
HDAC7_HUMAN
[Raw transfer]




7H1_A_3(5G11)
HDAH_PSEAE
[Raw transfer]




TFG_A_8(2VQJ)

[Raw transfer]




6DK_A_6(5G10)
HDAH_PSEAE
[Raw transfer]




6DK_B_10(5G10)
HDAH_PSEAE
[Raw transfer]




TFG_A_7(2VQO)
HDAC4_HUMAN
[Raw transfer]




7H1_B_7(5G11)
HDAH_PSEAE
[Raw transfer]




NU9_A_8(3ZNR)
HDAC7_HUMAN
[Raw transfer]




NU7_B_13(3ZNS)
HDAC7_HUMAN
[Raw transfer]




NU7_A_8(3ZNS)
HDAC7_HUMAN
[Raw transfer]




NU7_C_18(3ZNS)

[Raw transfer]




EDO_A_4(5JI5)
?
[Raw transfer]




EDO_A_4(5JI5)
?
[Raw transfer]




86 Fugue 74.3125% 6 * C2 *5G0J - ? -
58 HHSearch 73.1730% -20 - C3 -2VQJ 3.6
6 PsiBlast_PDB 72.5728% -17 - C3 -5EEM 3.8 ?
69 HHSearch 72.4624% -48 - C3 -5G1A - HDAH_ALCSD -
2 PsiBlast_PDB 72.3428% -8 - C3 -5G0J 6.0 ?
62 HHSearch 72.1930% -17 - C3 -5G0X - HDAH_PSEAE -
68 HHSearch 72.0424% -45 - C3 -5G1B - HDAH_ALCSD -
63 HHSearch 71.9230% -18 - C3 -5G0Y - HDAH_PSEAE -
13 PsiBlast_PDB 71.2728% -10 - C3 -5EFJ - ? -
5 PsiBlast_PDB 71.2428% -12 - C3 -5EEK 5.5 ?
71 HHSearch 71.0430% -55 - C3 -5JI5 2.0 ?
10 PsiBlast_PDB 70.8128% -12 - C3 -5EFB 4.4 ?
14 PsiBlast_PDB 70.6228% -13 - C3 -5EFK - ? -
7 PsiBlast_PDB 70.5328% -14 - C3 -5EEN 5.4 ?
11 PsiBlast_PDB 70.3628% -8 - C3 -5EFG - ? -
8 PsiBlast_PDB 70.3428% -10 - C3 -5EF7 3.8 ?
12 PsiBlast_PDB 70.2328% -8 - C3 -5EFH 3.3 ?
64 HHSearch 70.1228% -6 * C3 *5EFG - ? -
65 HHSearch 69.5828% -5 - C3 -5EEI - ? -
15 PsiBlast_PDB 69.5728% -9 - C3 -5EFN - ? -
50 PsiBlast_CBE 68.6031%-114 - C3 -5G11 3.6 HDAH_PSEAE
42 PsiBlast_CBE 68.1132%-114 - C3 -5G10 4.1 HDAH_PSEAE
43 PsiBlast_CBE 67.8232%-115 - C3 -5G10 4.2 HDAH_PSEAE
41 PsiBlast_CBE 66.9832%-114 - C3 -5LI3 3.7 HDAH_PSEAE
32 PsiBlast_CBE 66.9133% -70 - C3 -3C10 4.7 HDAC7_HUMAN
40 PsiBlast_CBE 66.8432%-113 - C3 -5LI3 4.2 HDAH_PSEAE
35 PsiBlast_CBE 66.1733% -70 - C3 -3C0Z 3.0 HDAC7_HUMAN
51 PsiBlast_CBE 66.0631%-113 - C3 -5G11 2.7 HDAH_PSEAE
34 PsiBlast_CBE 66.0033% -74 - C3 -3C0Z 3.0 HDAC7_HUMAN
29 PsiBlast_CBE 65.2533% -66 - C3 -3ZNR 7.3 HDAC7_HUMAN
25 PsiBlast_CBE 65.2133% -66 - C3 -3ZNS 6.8 HDAC7_HUMAN
24 PsiBlast_CBE 64.7233% -66 - C3 -3ZNS 7.0
31 PsiBlast_CBE 64.7133% -68 - C3 -3C10 4.1 HDAC7_HUMAN
30 PsiBlast_CBE 64.6933% -70 - C3 -3C10 5.0
33 PsiBlast_CBE 64.6533% -72 - C3 -3C0Z 3.6
26 PsiBlast_CBE 64.6233% -65 - C3 -3ZNS 7.3 HDAC7_HUMAN
17 PsiBlast_PDB 64.3536%-122 - C3 -5EEF 4.7 ?
16 PsiBlast_PDB 64.2836%-118 - C3 -5G0G 4.4 ?
22 PsiBlast_CBE 63.0336%-116 - C3 -5EEF 4.2 ?
39 PsiBlast_CBE 55.9235% -60 - C3 -5JI5 2.0 ?