@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1149: (2018-01-06 )
MIYAGILAGGTGTRMGISNLPKQFLELGDRPILIHTIEKFVLEPSIEKIVVGVHGDWVSHAEDLVDKYLPLYKERIIITKGGADRNTSIKNIIEAIDAYRPLTPEDIVVTHDSVRPFITLRMIQDNIQLAQNHDAVDTVVEAVDTIVESTNGQFITDIPNRAHLYQGQTPQTFRCKDFMDLYGSLSDEEKEILTDACKIFVIKGKDVALAKGEYSNLKITTVTDLKIAKSMIEKD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CTP_B_6(2XWL)
?
[Raw transfer]




CTP_A_5(4ZDQ)
ISPD_BURTA
[Raw transfer]




CDF_A_3(2VSI)
TARI_STRR6
[Raw transfer]




CDF_B_4(2VSI)
TARI_STRR6
[Raw transfer]




CDF_B_4(2VSI)
TARI_STRR6
[Raw transfer]




C5P_A_7(1W77)
ISPD_ARATH
[Raw transfer]




ACY_A_7(1VPA)
ISPD_THEMA
[Raw transfer]




2 PsiBlast_PDB 91.42100%-110 - C2 -2VSI 3.5 TARI_STRR6
21 PsiBlast_CBE 91.15100%-118 - C2 -2VSI 4.1 TARI_STRR6
1 PsiBlast_PDB 90.53100%-116 - C2 -2VSH - TARI_STRR6 -
22 PsiBlast_CBE 89.56100%-114 - C2 -2VSH - TARI_STRR6 -
158 HHSearch 78.5293% -56 - C2 -2VSI 4.0 TARI_STRR6
159 HHSearch 77.9793% -61 - C2 -2VSH - TARI_STRR6 -
3 PsiBlast_PDB 76.6447%-113 - C2 -4JIS - TARI_BACPZ -
157 HHSearch 62.6352% -28 - C- -3F1C - TARI_LISMF -
147 HHSearch 61.7730% -89 - C2 -5DDT - ISPD_BACSU -
4 PsiBlast_PDB 60.0930% -86 - C2 -5DDT - ISPD_BACSU -
6 PsiBlast_PDB 58.6530% -82 - C2 -5HS2 - ISPD_BACSU -
5 PsiBlast_PDB 57.8330% -85 - C2 -5DDV - ISPD_BACSU -
7 PsiBlast_PDB 57.1028% -87 - C2 -4CVH - ISPD_HUMAN -
151 HHSearch 56.8227% -67 - C2 -4ZDQ 7.7 ISPD_BURTA
165 HHSearch 56.6024% -69 - C2 -1I52 - ISPD_ECOLI -
12 PsiBlast_PDB 55.6828% -71 - C2 -4YS8 - ISPD_BURTA -
150 HHSearch 54.9027% -82 - C2 -4ZDQ - ISPD_BURTA -
13 PsiBlast_PDB 54.3428% -58 - C2 -4ZDQ - ISPD_BURTA -
8 PsiBlast_PDB 54.1527% -46 - C2 -1VPA 2.2 ISPD_THEMA
160 HHSearch 53.8923% -45 - C2 -3Q80 - ISPD_MYCTU -