@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1435: (2018-01-12 )
MNLKDYIATIENYPKEGITFRDISPLMADGNAYSYAVREIVQYATDKKVDMIVGPEARGFIVGCPVAFELGIGFAPVRKPGKLPREVISADYEKEYGVDTLTMHADAIKPGQRVLIVDDLLATGGTVKATIEMIEKLGGVMAGCAFLVELDELNGREKIGDYDYKVLMHY

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PRP_A_6(1ZN7)
APT_HUMAN
[Raw transfer]



AMP_B_7(4M0K)
?
[Raw transfer]



AMP_A_5(4M0K)
?
[Raw transfer]



AMP_B_5(1ZN8)
APT_HUMAN
[Raw transfer]



AMP_B_7(4M0K)
?
[Raw transfer]



AMP_A_4(1ZN8)
APT_HUMAN
[Raw transfer]



AMP_A_3(1ORE)
APT_HUMAN
[Raw transfer]



AMP_C_9(4M0K)
?
[Raw transfer]



AMP_D_11(4M0K)
?
[Raw transfer]



AMP_B_3(1ZN9)
APT_HUMAN
[Raw transfer]



AMP_D_11(4M0K)
?
[Raw transfer]



AMP_B_3(1ZN9)
APT_HUMAN
[Raw transfer]



PRP_B_10(1ZN7)
APT_HUMAN
[Raw transfer]



AMP_B_3(4X45)
APT_HUMAN
[Raw transfer]



AMP_A_2(5B6H)
?
[Raw transfer]



AMP_B_3(4X45)
APT_HUMAN
[Raw transfer]



AMP_A_2(5B6H)
?
[Raw transfer]



AMP_A_2(4X44)
APT_HUMAN
[Raw transfer]



HSX_A_4(5VN4)
?
[Raw transfer]



HSX_B_8(5VN4)
?
[Raw transfer]



9DA_I_9(1L1Q)
?
[Raw transfer]



9DA_A_3(1L1R)
?
[Raw transfer]



9DA_I_9(1L1Q)
?
[Raw transfer]



ADE_B_12(1ZN7)
APT_HUMAN
[Raw transfer]



ADE_A_8(1ZN7)
APT_HUMAN
[Raw transfer]



CIT_A_4(1QB7)
?
[Raw transfer]
67 HHSearch 84.4949%-153 - C4 -2DY0 - APT_ECOLI -
65 HHSearch 83.9349%-160 - C4 -4LZA - APT_THEP3 -
66 HHSearch 83.7049%-153 - C4 -5B6H 7.1 ?
3 PsiBlast_PDB 82.4548%-165 - C4 -4LZA - APT_THEP3 -
4 PsiBlast_PDB 82.0452%-153 - C4 -2DY0 - APT_ECOLI -
2 PsiBlast_PDB 80.9652%-155 - C4 -5B6H 7.1 ?
1 PsiBlast_PDB 80.7652%-157 - C4 -4MB6 - APT_YERPS -
63 HHSearch 80.5043%-158 - C4 -4M0K 5.8 ?
5 PsiBlast_PDB 80.4744%-154 - C4 -4M0K 5.5 ?
64 HHSearch 80.3943%-159 - C4 -4M0K 5.7 ?
22 PsiBlast_CBE 80.3344%-155 - C4 -4M0K 5.3 ?
21 PsiBlast_CBE 79.0844%-158 - C4 -4M0K 5.7 ?
23 PsiBlast_CBE 79.0444%-156 - C4 -4M0K 5.8 ?
68 HHSearch 67.5240% -40 * C4 *4X45 6.6 APT_HUMAN
25 PsiBlast_CBE 66.8440% -38 - C4 -1ZN8 6.6 APT_HUMAN
27 PsiBlast_CBE 66.4940% -41 - C4 -4X45 6.6 APT_HUMAN
8 PsiBlast_PDB 66.4740% -33 - C4 -1ZN7 5.1 APT_HUMAN
10 PsiBlast_PDB 66.4140% -34 - C4 -1ZN9 - APT_HUMAN -
7 PsiBlast_PDB 66.3740% -25 - C4 -1ORE 6.8 APT_HUMAN
26 PsiBlast_CBE 66.3640% -34 - C4 -1ZN7 4.4 APT_HUMAN
24 PsiBlast_CBE 66.3140% -32 - C4 -1ZN9 6.7 APT_HUMAN
69 HHSearch 66.1740% -31 - C4 -1ZN9 6.7 APT_HUMAN
9 PsiBlast_PDB 66.1240% -35 - C4 -1ZN8 7.2 APT_HUMAN
15 PsiBlast_PDB 65.8938% -70 - C4 -1L1R 3.5 ?
6 PsiBlast_PDB 65.6540% -27 - C4 -4X44 6.7 APT_HUMAN
14 PsiBlast_PDB 64.4338% -57 - C4 -1L1Q 3.4 ?
70 HHSearch 63.9033% -82 - C4 -1L1Q 3.3 ?