@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1775: (2018-01-19 )
MEQTFFIIKPDGVKRGLVGEVLKRIEQRGFTIEKLEFRSQVSEELIDQHYQDLVGQSFYPPIREFMTSGPVLVGVISGPKVIETWRTMMGATRPEEALPGTIRGDFAKAAGENEIIQNVVHGSDSEESAKREIALWF

Atome Classification :

(47 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

UDP_B_6(4F4A)
?
[Raw transfer]




ADP_C_6(4UOH)
?
[Raw transfer]




YYY_A_4(4UOG)
?
[Raw transfer]




UDP_C_8(4F4A)
?
[Raw transfer]




UDP_A_4(4F4A)
?
[Raw transfer]




ADP_G_7(1ZS6)
NDK3_HUMAN
[Raw transfer]




CDP_B_6(4FKX)
?
[Raw transfer]




ADP_B_4(4UOH)
?
[Raw transfer]




CDP_A_4(4FKX)
?
[Raw transfer]




GDP_D_14(3BBF)
NDKB_HUMAN
[Raw transfer]




CDP_C_9(4FKX)
?
[Raw transfer]




CDP_C_9(4FKX)
?
[Raw transfer]




DAT_A_4(4UOF)
?
[Raw transfer]




ADP_B_4(5KK8)
?
[Raw transfer]




GDP_B_6(4FKY)
?
[Raw transfer]




YYY_C_8(4UOG)
?
[Raw transfer]




GDP_A_4(4FKY)
?
[Raw transfer]




DAT_C_8(4UOF)
?
[Raw transfer]




ADP_A_3(3NGU)
?
[Raw transfer]




ADP_B_4(3NGU)
?
[Raw transfer]




DAT_B_6(4UOF)
?
[Raw transfer]




ATP_B_6(1WKL)
NDK_THET8
[Raw transfer]




35G_E_11(1BHN)
NDKA1_BOVIN
[Raw transfer]




GDP_C_9(4FKY)
?
[Raw transfer]




YYY_B_6(4UOG)
?
[Raw transfer]




DGI_G_7(1S59)
NDK2_ARATH
[Raw transfer]




ADP_K_11(1ZS6)
NDK3_HUMAN
[Raw transfer]




ADP_I_9(1ZS6)
NDK3_HUMAN
[Raw transfer]




ADP_I_9(1ZS6)
NDK3_HUMAN
[Raw transfer]




FMT_E_20(5U2I)
?
[Raw transfer]




ADP_A_3(5KK8)
?
[Raw transfer]




DG_C_9(3BBB)
NDKB_HUMAN
[Raw transfer]




DTT_B_6(3NGS)
?
[Raw transfer]




DG_E_11(3BBB)
NDKB_HUMAN
[Raw transfer]




DA_C_8(3BBB)
NDKB_HUMAN
[Raw transfer]




PHS_A_4(1WKL)
NDK_THET8
[Raw transfer]




DA_E_10(3BBB)
NDKB_HUMAN
[Raw transfer]




160 HHSearch 95.7655%-132 - C6 -1WKJ - NDK_THET8 -
161 HHSearch 94.9755%-129 - C6 -1WKK - NDK_THET8 -
6 PsiBlast_PDB 93.4053%-136 - C6 -1WKJ - NDK_THET8 -
7 PsiBlast_PDB 92.5153%-128 - C6 -1WKK - NDK_THET8 -
8 PsiBlast_PDB 92.4053%-136 - C6 -1WKL 2.8 NDK_THET8
28 PsiBlast_CBE 92.0753%-139 - C6 -1WKL 5.2 NDK_THET8
149 HHSearch 90.7450%-118 - C6 -5U2I - ? -
146 HHSearch 90.4152% -87 - C6 -1K44 - NDK_MYCTU -
148 HHSearch 90.2250%-116 - C6 -5U2I - ? -
41 PsiBlast_CBE 89.9549%-118 - C6 -1NUE - NDKB_HUMAN -
12 PsiBlast_PDB 89.8549%-123 - C6 -1NUE - NDKB_HUMAN -
31 PsiBlast_CBE 89.8249%-117 - C6 -3BBF 5.4 NDKB_HUMAN
40 PsiBlast_CBE 89.2949%-116 - C6 -1NUE - NDKB_HUMAN -
38 PsiBlast_CBE 89.2549%-124 - C6 -1NUE - NDKB_HUMAN -
76 PsiBlast_CBE 89.1749%-125 - C6 -2HVE - NDKA_HUMAN -
150 HHSearch 89.1052%-120 * C6 *1ZS6 6.5 NDK3_HUMAN
68 PsiBlast_CBE 89.0149%-111 - C6 -1BHN 5.4 NDKA1_BOVIN
29 PsiBlast_CBE 88.9849%-115 - C6 -3BBF - NDKB_HUMAN -
79 PsiBlast_CBE 88.8150%-119 - C6 -1ZS6 5.6 NDK3_HUMAN
80 PsiBlast_CBE 88.7650%-120 - C6 -1ZS6 6.5 NDK3_HUMAN
81 PsiBlast_CBE 88.5650%-123 - C6 -1ZS6 6.4 NDK3_HUMAN
23 PsiBlast_CBE 88.4350%-121 - C6 -4UOG 5.2 ?
2 PsiBlast_PDB 87.9250%-123 - C6 -4UOG 5.2 ?
25 PsiBlast_CBE 87.5150%-118 - C6 -4UOF 5.8 ?
131 PsiBlast_CBE 87.3847%-107 - C6 -5U2I 3.4 ?
35 PsiBlast_CBE 87.3149%-116 - C6 -3BBB 3.6 NDKB_HUMAN
27 PsiBlast_CBE 87.3051%-110 - C6 -5KK8 5.3 ?
87 PsiBlast_CBE 87.0746%-106 - C6 -1S59 5.4 NDK2_ARATH
1 PsiBlast_PDB 86.9950%-118 - C6 -4UOF 6.2 ?
24 PsiBlast_CBE 86.7550%-116 - C6 -4UOG 4.6 ?
5 PsiBlast_PDB 86.7551%-110 - C6 -5KK8 4.9 ?
126 PsiBlast_CBE 86.5949%-102 - C6 -4F4A 5.4 ?
21 PsiBlast_CBE 86.5950%-120 - C6 -4UOH 6.3 ?
98 PsiBlast_CBE 86.5746%-106 - C6 -3NGU 7.3 ?
124 PsiBlast_CBE 86.2149%-101 - C6 -4F4A 5.2 ?
117 PsiBlast_CBE 86.1249%-101 - C6 -4FKY 6.5 ?
125 PsiBlast_CBE 85.9349%-103 - C6 -4F4A 4.7 ?
22 PsiBlast_CBE 85.9250%-122 - C6 -4UOH 6.2 ?
97 PsiBlast_CBE 85.3346%-114 - C6 -3NGU 5.6 ?
145 HHSearch 85.2651%-101 - C6 -4FKX 5.3 ?
26 PsiBlast_CBE 85.2350%-119 - C6 -4UOF 5.5 ?
119 PsiBlast_CBE 85.2149%-102 - C6 -4FKX 5.3 ?
118 PsiBlast_CBE 85.1849% -97 - C6 -4FKY 6.6 ?
121 PsiBlast_CBE 85.1249%-102 - C6 -4FKX 5.4 ?
113 PsiBlast_CBE 84.9746%-108 - C6 -3NGS 1.8 ?
120 PsiBlast_CBE 84.9049% -99 - C6 -4FKX 5.3 ?
116 PsiBlast_CBE 84.2449%-102 - C6 -4FKY 6.3 ?