@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Lmo0496: (2016-03-16 )
MKLLLKNINELAAKQKSEGLTAFEKERQAALRQEYLKKIRGTVQDNLHHVTIIDPLGDDVTPKKLKEIQAELRG
Atome Classification :
(20 SA)
------------------------------------------------------------------------.......--------..10.......-.20........30--....----...----..40.......----.-50....-.-...60.-..-.....70...-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------MK
L
L
L
K
N
--------
I
N
E
L
A
A
K
Q
KSE-GL
T
A
F
E
K
E
R
Q
A
A
---
L
R
Q
E
----
Y
L
K
----
K
I
R
G
T
V
QDNL
H
----
H
-
V
T
I
IDP-L-GDDV
T
P
-
K
K
-
L
K
E
I
Q
A
E
LRG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
82.36
43%
-15
- C2 -
3BHP
-
YNZC_BACSU
A:
[3-52]
------------------------------------------------------------------------
S
N
A
K
I
A
R
--------
I
N
E
L
A
A
K
A
K
A
G
-
V
I
T
E
E
E
K
A
E
Q
Q
K
---
L
R
Q
E
----
Y
L
K
----
G
F
R
S
S
M
K
N
T
L
K
----
S
-
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
76.50
51%
-16
- C2 -
3BHP
-
YNZC_BACSU
A:
[10-52]
---------------------------------------------------------------------------------------
I
N
E
L
A
A
K
A
K
A
G
-
V
I
T
E
E
E
K
A
E
Q
Q
K
---
L
R
Q
E
----
Y
L
K
----
G
F
R
S
S
M
K
N
T
L
K
----
S
-
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
74.99
50%
-11
- C2 -
2HEP
-
YNZC_BACSU
A:
[1-42]
----------------------------------------------------------------------MI
S
N
A
K
I
A
R
--------
I
N
E
L
A
A
K
A
K
A
G
-
V
I
T
E
E
E
K
A
E
Q
Q
K
---
L
R
Q
E
----
Y
L
K
----
G
F
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
74.94
43%
-16
- C2 -
2JVD
-
YNZC_BACSU
A:
[3-48]
------------------------------------------------------------------------
S
N
A
K
I
A
R
--------
I
N
E
L
A
A
K
A
K
A
G
-
V
I
T
E
E
E
K
A
E
Q
Q
K
---
L
R
Q
E
----
Y
L
K
----
G
F
R
S
S
M
K
L
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
73.27
21%
-48
- C2 -
4TR2
8
?
A:
[54-627]
----------------DD
V
H
K
I
I
S
E
L
R
F
L
Q
K
V
E
T
I
L
E
S
S
NMSVSDVEADANAYNPDRDAP
K
E
E
L
Q
K
L
QDK
K
S
L
R
L
I
V
S
E
--------
N
H
A
T
S
P
S
F
F
E
E
-
S
L
L
------
Q
E
D
---
V
V
S
F
----
I
Q
S
----
K
G
K
L
S
N
L
K
N
L
K
-------
S
M
I
I
D
-
L
-
N
S
D
M
T
D
-
E
E
-
L
A
E
Y
I
S
L
L
E
R
K
G
A
L
I
E
S
D
K
L
V
G
A
DYKFNDEYRNLQ
W
G
L
D
L
A
RLDET
Q
D
L
I
N
A
N
RV
S
V
T
K
I
C
V
I
DSGIDYNHPDLRNNIDVN
V
K
E
L
H
GRKGVDDDSNGVVDDVYGANFVNNSGDPMDDNY
H
G
T
H
V
S
G
I
I
SAVGNNGIGIVGVDGH
S
K
L
V
I
C
K
ALDQHK
L
G
R
L
G
D
M
F
K
C
I
D
Y
C
I
S
R
QAH
M
I
N
G
S
F
S
F
D
E
YS
N
I
F
N
A
S
V
E
H
L
R
S
L
G
I
L
F
F
V
S
A
S
N
C
A
H
D
KL
S
K
P
D
IAKCDLAV
N
H
R
Y
PPILSKTHNN
V
I
A
V
A
N
L
K
R
D
LDE
S
Y
S
L
S
VNSFYSNIYCQ
L
A
A
PGTN
I
Y
S
T
T
P
MN
N
Y
R
K
L
N
G
T
S
M
A
S
P
H
V
A
A
I
A
S
I
V
R
S
I
NPNLT
Y
L
Q
I
V
E
I
L
R
N
A
I
V
K
L
PSLTERVSWG
G
Y
V
D
I
L
R
A
V
N
L
A
I
D
S
K
7
HHSearch
72.67
48%
-11
- C2 -
2HEP
-
YNZC_BACSU
A:
[3-42]
------------------------------------------------------------------------
S
N
A
K
I
A
R
--------
I
N
E
L
A
A
K
A
K
A
G
-
V
I
T
E
E
E
K
A
E
Q
Q
K
---
L
R
Q
E
----
Y
L
K
----
G
F
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
70.45
54%
-23
- C2 -
2JVD
-
YNZC_BACSU
A:
[10-46]
---------------------------------------------------------------------------------------
I
N
E
L
A
A
K
A
K
A
G
-
V
I
T
E
E
E
K
A
E
Q
Q
K
---
L
R
Q
E
----
Y
L
K
----
G
F
R
S
S
M
K
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
70.20
25%
-14
- C2 -
4UOL
1
CAPP1_MAIZE
A:
[167-237]
------------------------------------------------------------------------------
N
--------
A
K
D
I
T
D
D
D
K
Q
E
-
L
D
E
A
L
Q
R
E
I
Q
A
A
---
F
R
T
D
----
E
I
R
----
R
A
Q
P
T
P
Q
D
E
M
R
----
Y
G
M
S
Y
I
H
E
-
T
-
V
W
K
G
V
P
-
K
F
-
L
R
R
V
D
T
A
L
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
64.91
17%
-20
* C4 *
2DIQ
-
A:
[1-110]
-------------------------------------------------------------GSSGSSGRS
L
Q
L
D
K
L
V
N
E
--------
M
T
Q
H
Y
E
N
S
V
P
E
-
D
L
T
V
H
V
G
D
I
V
A
A
---
P
L
P
T
NGSW
Y
R
A
----
R
V
L
G
T
L
E
N
G
N
L
----
D
-
L
Y
F
V
D
F
-
G
-
D
N
G
D
C
P
-
L
K
D
L
R
A
L
R
S
D
F
L
S
LPFQAIECSLAR
I
A
S
G
P
SSG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
64.55
56%
0
- C2 -
2HEP
-
YNZC_BACSU
A:
[10-42]
---------------------------------------------------------------------------------------
I
N
E
L
A
A
K
A
K
A
G
-
V
I
T
E
E
E
K
A
E
Q
Q
K
---
L
R
Q
E
----
Y
L
K
----
G
F
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
61.24
31%
-18
- C2 -
3FFY
1
?
A:
[55-107]
---------------------------------------------------------------------------
L
L
K
T
--------
L
T
Q
F
A
E
Y
---------
F
G
P
E
R
Q
V
S
---
V
S
R
E
----
I
S
K
I
H
E
E
T
V
R
G
T
L
S
E
L
I
E
----
H
-
F
T
A
T
D
P
-
R
-
G
E
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
60.64
21%
-9
- C2 -
4QNU
3
CMOB_ECOK1
A:
[1-323]
---------------------------------------------------------MIDF
G
N
F
Y
S
L
I
A
K
N
H
L
S
H
W
L
E
T
--------
L
P
A
Q
I
A
N
W
Q
R
E
---
Q
Q
H
G
L
F
K
Q
W
S
---
N
A
V
E
----
F
L
P
----
E
I
K
P
Y
R
L
D
L
L
H
----
S
-
V
T
A
E
S
E
----
E
P
L
S
A
-
G
Q
-
I
K
R
I
E
T
L
M
R
N
L
MPWRK
G
P
F
S
L
YGVNIDTEWR
S
D
W
K
W
D
R
V
LPHLSDLTG
R
T
I
L
D
V
GCGSG
Y
H
M
W
R
M
I
G
A
GAH
L
A
V
G
I
D
PT
Q
L
F
L
C
Q
F
E
A
V
R
K
L
L
GNDQR
A
H
L
L
PLGIEQLPALKAFD
T
V
F
S
M
GVLYHRRS
P
L
E
H
L
W
Q
L
K
D
Q
LVNE
G
E
L
V
L
E
T
L
V
I
D
G
D
EN
T
V
L
V
P
G
DRYAQMRNVYFIPS
A
L
A
L
K
N
W
L
K
K
C
GFVDIRIA
D
V
S
V
TTTEE
Q
R
R
T
EWMVTESLADFLDPHDPGKTVEGYP
A
P
K
R
A
V
L
I
A
R
K
P---------------------------------------------------------------------------------------------------------------
34
Fugue
59.21
16%
5
- C4 -
2HQX
-
SND1_HUMAN
A:
[8-96]
----------------------------------------------------------------------T
Q
F
Q
K
L
M
E
N
--------
M
R
N
D
I
A
S
H
P
P
V
E
G
S
Y
A
P
R
R
G
E
F
C
I
---
A
K
F
V
----
D
G
E
----
W
Y
R
A
R
V
E
K
V
E
S
PA
K
I
H
-
V
F
Y
I
D
Y
G
N
-
R
E
V
L
P
S
-
T
R
-
L
G
T
L
S
P
A
F
S
T
RVLPAQA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
57.66
17%
-49
- C3 -
3NUQ
6
SDT1_YEAST
A:
[3-282]
MTVEY
T
A
S
D
L
A
T
Y
Q
N
E
V
N
E
Q
I
A
K
N
K
A
H
L
E
S
LTHPGSKVTFPIDQPN
L
K
V
F
F
F
D
I
D
NCLYKSS
T
R
I
H
D
L
M
Q
Q
S
I
L
R
F
F
Q
T
--------
H
L
K
L
S
P
E
D
A
H
V
-
L
N
N
S
Y
Y
K
E
Y
G
L
A
---
I
R
G
L
----
V
M
F
----
H
-
K
V
N
A
L
E
Y
N
R
----
L
-
V
D
D
S
L
P
-
L
-
Q
D
I
L
K
P
D
I
P
-
L
R
N
M
L
L
R
L
R
Q
SGKIDKL
W
L
F
T
NAY
K
N
H
A
I
R
C
L
R
L
L
GIADLFD
G
L
T
Y
CDYSRTD
T
L
V
C
K
PH
V
K
A
F
E
K
A
M
K
E
S
GLARYEN
A
Y
F
I
D
DS
G
K
N
I
E
T
G
I
K
L
GMK
T
C
I
H
L
V
ENEVGQTPEG
A
I
V
I
SDILELPHVVSDLF-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
51.04
36%
17
- C2 -
1Y96
-
GEMI7_HUMAN
B:
[49-73]
-------------------------------------------------------------------------------------------------
E
-
S
L
E
S
Q
E
Q
R
A
R
A
A
---
L
R
E
R
----
Y
L
R
----
S
L
L
A
M
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
47.67
20%
-10
- C2 -
3R15
-
?
A:
[29-75]
------------------------------------------------------------------------------
F
--------
I
N
A
L
E
N
E
L
K
T
R
-
H
I
P
A
G
A
V
I
D
M
L
A
---
E
I
N
T
----
E
A
L
----
A
L
-------------
D
-
Y
Q
I
V
D
K
-
K
P
G
T
S
I
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
45.99
13%
8
- C2 -
2KZ6
-
?
A:
[1-100]
------------------------------------------------------------------------
M
L
L
H
S
V
E
TPRGEILN
V
S
E
Q
E
A
R
D
V
F
G
-
A
S
E
Q
A
I
A
D
A
R
K
A
---
T
I
L
Q
----
T
L
R
----
I
E
R
D
E
R
L
R
A
C
D
----
W
-
T
Q
V
Q
D
V
-
V
-
L
T
A
D
Q
K
-
A
T
-
W
A
K
Y
R
Q
A
L
R
D
LPETVTDL
S
Q
I
V
W
P
Q
L
PV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
45.34
15%
3
* C3 *
3PRO
-
?
C:
[9-67]
------------------------------------------------------------------------------------------
K
F
A
M
Q
R
D
L
-
G
I
F
P
T
Q
L
P
Q
Y
L
Q
T
E
K
L
A
R
T
----
Q
A
A
----
A
I
E
R
E
F
G
A
Q
F
A
----
G
-
S
W
I
E
R
N
E
D
-
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
42.55
33%
21
- C2 -
3FQ6
-
?
A:
[66-107]
-------------------------------------------------------------------------------------------------------
F
G
T
E
R
Q
A
T
---
V
S
R
E
----
I
S
K
L
H
E
E
T
V
R
G
S
L
A
E
L
I
E
----
H
-
F
T
A
T
E
P
-
R
-
G
E
I
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
37.83
25%
55
* C2 *
1OFC
-
X:
[90-109]
-----------------------------------------------------------------------------------------------
E
A
E
-
P
L
T
E
E
E
I
Q
E
K
E
N
---
L
L
S
Q
----
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------