@TOME V2.3
(Nov 2016)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : bsu09800: (2016-06-15 )
MAVNFYDVAYDLENALRGSEEFTRLKNLYDEVNADESAKRMFENFRDVQLRLQQKQMAGEEITQEEVTQAQKTVALVQQHEKISQLMEAEQRMSMLIGELNKIIMKPLEELYGSVEG
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10....---....20...----------------------------......30........40-.....---...50---........-60........70........80..---...-...90.-.-.......100--........110-......----------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
A
V
N
F
Y
D
V
A
Y
D
L
E
N
A
---LRG
S
E
-
E
F
T
----------------------------
R
L
K
N
L
Y
D
EVNA
D
E
S
A
K
R
M
-
F
E
N
F
R
---
D
V
Q
L
R
---
L
Q
Q
K
QMAG-EEI
T
Q
E
E
V
T
Q
A
Q
K
T
V
A
L
V
Q
Q
H
E
K
I
---
S
Q
L
-
M
E
A
E
-
Q
-
R
-
M
S
M
L
I
G
E
L
N
---
K
I
I
M
K
P
L
E
E
L
--YGSVEG----------------------------------------------------------
10
HHSearch
80.51
100%
-159
- C6 -
2OEE
1
YHEA_BACSU
A:
[3-112]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
F
Y
D
V
A
Y
D
L
E
N
A
---
L
R
G
S
E
-
E
F
T
----------------------------
R
L
K
N
L
Y
D
E
V
N
A
D
E
S
A
K
R
M
-
F
E
N
F
R
---
D
V
Q
L
----------------------
Q
A
Q
K
T
V
A
L
V
Q
Q
H
E
K
I
---
S
Q
L
-
M
E
A
E
-
Q
-
R
-
M
S
M
L
I
G
E
L
N
---
K
I
I
M
K
P
L
E
E
L
--
Y
---------------------------------------------------------------
1
PsiBlast_PDB
79.31
94%
-159
- C6 -
2OEE
1
YHEA_BACSU
A:
[3-112]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
F
Y
D
V
A
Y
D
L
E
N
A
---
L
R
G
S
E
-
E
F
T
----------------------------
R
L
K
N
L
Y
D
E
V
N
A
D
E
S
A
K
R
M
-
F
E
N
F
R
---
D
V
Q
L
----------------------
Q
A
Q
K
T
V
A
L
V
Q
Q
H
E
K
I
---
S
Q
L
-
M
E
A
E
-
Q
-
R
-
M
S
M
L
I
G
E
L
N
---
K
I
I
M
K
P
L
E
E
L
--
Y
---------------------------------------------------------------
11
HHSearch
74.16
50%
-115
- C6 -
2OEQ
-
Y640_GEOKA
A:
[3-115]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
P
L
H
A
L
A
R
Q
L
E
Q
A
---
I
R
A
S
E
-
P
F
Q
----------------------------
Q
L
K
R
A
Y
E
D
V
R
R
D
E
T
A
Y
R
M
-
F
A
N
V
R
---
D
I
Q
L
R
---
L
H
E
K
Q
M
R
G
-
A
A
I
L
P
D
E
I
E
Q
A
Q
K
A
M
A
L
A
Q
Q
N
E
K
L
---
A
R
L
-
M
A
L
E
-
Q
-
Q
-
M
S
I
T
I
A
E
V
Q
---
Q
I
A
M
K
P
L
E
E
L
--
H
R
S
F
------------------------------------------------------------
2
PsiBlast_PDB
73.14
48%
-115
- C6 -
2OEQ
-
Y640_GEOKA
A:
[5-114]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
H
A
L
A
R
Q
L
E
Q
A
---
I
R
A
S
E
-
P
F
Q
----------------------------
Q
L
K
R
A
Y
E
D
V
R
R
D
E
T
A
Y
R
M
-
F
A
N
V
R
---
D
I
Q
L
R
---
L
H
E
K
Q
M
R
G
-
A
A
I
L
P
D
E
I
E
Q
A
Q
K
A
M
A
L
A
Q
Q
N
E
K
L
---
A
R
L
-
M
A
L
E
-
Q
-
Q
-
M
S
I
T
I
A
E
V
Q
---
Q
I
A
M
K
P
L
E
E
L
--
H
R
S
-------------------------------------------------------------
25
Fugue
59.94
79%
-110
- C6 -
2OEE
1
YHEA_BACSU
A:
[3-112]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
F
Y
D
V
A
Y
D
L
E
N
A
---
L
R
G
S
E
-
E
F
T
----------------------------
R
L
K
N
L
Y
D
E
V
N
A
D
E
S
A
K
-
R
M
F
E
N
F
R
---
D
V
Q
L
Q
---
A
Q
K
T
V
A
L
V
-
Q
Q
------------------
H
E
K
I
---
S
Q
L
M
E
A
E
Q
-
R
M
S
M
L
---
I
G
E
L
N
---
K
I
I
M
K
P
L
E
E
L
--
Y
---------------------------------------------------------------
13
HHSearch
47.78
10%
-75
- C6 -
2PIH
-
YMCA_BACSU
A:
[6-122]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
D
I
V
Q
Q
A
R
N
L
A
K
M
---
I
S
E
T
E
-
E
V
D
----------------------------
F
F
K
R
A
E
A
Q
I
N
E
N
D
K
V
S
T
I
-
V
N
Q
I
K
---
A
L
Q
K
Q
---
A
V
N
L
K
H
Y
E
K
H
E
A
L
K
Q
V
E
A
K
I
D
A
L
Q
E
E
L
E
E
I
P
V
I
---
Q
E
F
-
R
D
S
Q
-
M
-
E
-
V
N
D
L
L
Q
L
V
A
---
H
T
I
S
N
Q
V
T
N
E
--
I
I
T
S
T
G
----------------------------------------------------------
33
Fugue
43.04
16%
-144
- C5 -
4J1V
3
MOB1A_HUMAN
A:
[9-180]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LRQAVMLPEGED
L
N
E
W
I
A
V
N
T
V
D
F
F
N
Q
I
N
M
L
---
Y
G
T
I
T
-
E
F
C
TEASCPVMSAGPR
Y
E
Y
H
WADP
I
K
C
S
A
P
K
Y
I
D
Y
L
M
T
W
V
Q
D
Q
L
D
D
E
T
L
-
F
P
S
K
I
---
G
V
P
F
P
KN
F
M
S
V
A
K
T
I
L
-
K
R
L
F
R
V
Y
A
H
I
Y
H
Q
H
F
D
S
V
M
Q
L
Q
E
E
---
A
H
L
-
N
T
S
F
-
K
-
H
-
F
I
F
F
V
Q
E
F
N
LID
R
R
E
L
A
P
L
Q
E
L
--
I
E
K
L
G
-----------------------------------------------------------
8
PsiBlast_PDB
42.17
33%
-212
- C6 -
4J76
-
?
A:
[341-376]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
E
D
D
N
K
L
---
N
E
I
-
G
E
K
Y
-
K
-
K
-
G
E
M
L
S
G
E
I
K
---
K
I
L
I
D
V
L
T
E
L
------------------------------------------------------------------
21
HHSearch
41.49
0%
-234
- C1 -
2LNM
-
A:
[8-18]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
M
E
N
P
D
V
---
A
M
A
-
F
------------------------------------------------------------------------------------------------
12
HHSearch
40.53
23%
25
- C6 -
2IAZ
-
Y1372_STRPN
A:
[1-111]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
N
I
Y
D
S
A
N
E
L
S
R
G
---
L
R
G
L
P
-
E
Y
K
----------------------------
A
V
K
A
A
K
D
A
I
A
A
D
A
E
A
S
K
I
-
F
T
D
Y
L
---
A
F
Q
E
E
---
I
Q
K
L
A
-----
M
P
D
A
S
F
Q
A
K
M
E
G
F
G
K
Q
I
Q
G
N
S
L
L
---
S
E
F
-
F
T
K
Q
-
Q
-
Q
-
L
A
I
Y
L
S
D
I
E
---
K
I
V
F
E
P
V
S
E
L
--
L
---------------------------------------------------------------
7
PsiBlast_PDB
40.10
33%
-188
- C6 -
4J75
1
?
A:
[341-376]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
E
D
D
N
K
L
---
N
E
I
-
G
E
K
Y
-
K
-
K
-
G
E
M
L
S
G
E
I
K
---
K
I
L
I
D
V
L
T
E
L
------------------------------------------------------------------
9
PsiBlast_PDB
39.54
33%
-176
- C6 -
4JFA
-
?
A:
[339-374]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
L
E
D
D
N
K
L
---
N
E
I
-
G
E
K
Y
-
K
-
K
-
G
E
M
L
S
G
E
I
K
---
K
I
L
I
D
V
L
T
E
L
------------------------------------------------------------------
30
Fugue
39.21
11%
-109
* C4 *
4OM3
2
TLE1_HUMAN
A:
[10-126]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------K
F
T
I
P
E
S
L
D
R
I
K
E
E
F
Q
---
F
L
Q
A
Q
-
Y
H
S
----------------------------
L
K
L
E
C
E
K
L
A
S
E
K
T
E
M
Q
R
H
-
Y
V
M
Y
Y
---
E
M
S
Y
G
---
L
N
I
E
M
H
K
Q
-
T
E
I
A
K
R
L
N
T
I
C
A
Q
V
I
P
F
L
S
Q
E
H
Q
Q
---
Q
V
A
-
Q
A
V
E
-
R
-
A
-
K
Q
V
T
M
A
E
L
N
---
A
I
I
G
Q
Q
Q
L
Q
A
--
Q
H
L
S
H
-----------------------------------------------------------
3
PsiBlast_PDB
37.69
24%
28
- C6 -
2IAZ
-
Y1372_STRPN
A:
[3-110]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
I
Y
D
S
A
N
E
L
S
R
G
---
L
R
G
L
P
-
E
Y
K
----------------------------
A
V
K
A
A
K
D
A
I
A
A
D
A
E
A
S
K
I
-
F
T
D
Y
L
---
A
F
Q
E
E
---
I
Q
K
L
A
-----
M
P
D
A
S
F
Q
A
K
M
E
G
F
G
K
Q
I
Q
G
N
S
L
L
---
S
E
F
-
F
T
K
Q
-
Q
-
Q
-
L
A
I
Y
L
S
D
I
E
---
K
I
V
F
E
P
V
S
E
L
------------------------------------------------------------------
20
HHSearch
37.31
11%
-165
* C6 *
2MXD
-
POLG_PESV
A:
[948-982]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
-
I
A
L
R
D
D
E
Y
D
E
W
Q
D
I
I
R
D
W
R
K
E
M
T
V
---
Q
Q
F
-
L
D
L
K
-
E
-
R
-
A
---------------------------------------------------------------------------------------
26
Fugue
36.92
11%
-55
- C6 -
2PIH
-
YMCA_BACSU
A:
[2-124]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
L
Y
S
K
K
D
I
V
Q
Q
A
R
N
L
A
K
M
I
S
E
T
E
-
E
V
D
----------------------------
F
F
K
R
A
E
A
Q
I
N
E
N
D
K
V
S
T
I
-
V
N
Q
I
K
---
A
L
Q
K
Q
---
A
V
N
L
K
H
Y
E
K
H
E
A
L
K
Q
V
E
A
K
I
D
A
L
Q
E
E
L
E
E
I
P
V
I
---
Q
E
F
-
R
D
S
Q
M
E
-
V
-
N
D
L
L
Q
L
V
A
H
---
T
I
S
N
Q
V
T
N
E
I
--
I
T
S
T
G
G
D---------------------------------------------------------
14
HHSearch
36.86
25%
-272
- C6 -
3TJ6
-
?
B:
[1-16]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
I
Y
N
K
A
R
E
V
I
N
A
---
V
N
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
33.93
32%
-97
- C2 -
1GNY
2
XY10C_CELJA
A:
[92-146]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
C
---
L
A
G
S
S
-
E
L
T
----------------------------
A
D
T
D
L
T
L
T
C
T
I
D
E
D
D
D
K
F
-
N
Q
T
A
R
---
D
V
Q
V
G
---
I
Q
A
K
G
T
P
A
-
G
T
I
T
I
K
S
V
T
-----------------------------------------------------------------------------------------------------------------------
27
Fugue
32.36
13%
-33
- C4 -
1XAW
-
OCLN_HUMAN
A:
[416-522]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
W
I
R
E
Y
---
P
P
---
I
T
S
D
Q
-
Q
R
Q
----------------------------
L
Y
K
R
N
F
D
T
G
L
Q
E
Y
K
S
L
Q
S
-
V
L
D
E
I
---
N
K
E
L
S
---
R
L
D
K
E
L
D
D
-
Y
R
E
E
S
E
E
Y
M
A
A
A
D
E
Y
N
R
L
K
Q
V
K
G
S
---
A
D
Y
-
K
S
K
K
-
N
-
H
-
C
K
Q
L
K
S
K
L
S
---
H
I
--
K
K
M
V
G
D
--
Y
D
R
Q
K
T
----------------------------------------------------------
31
Fugue
27.17
23%
-18
* C5 *
5DFM
10
MALE_ECOLI
A:
[1-527]
KIEEG
K
L
V
I
W
I
N
GDKG
Y
N
G
L
A
E
V
G
K
K
F
E
K
D
TG
I
K
V
T
V
E
H
P
DK
L
E
E
K
F
P
Q
V
A
A
T
GDGPD
I
I
F
W
AHDR
F
G
G
Y
A
Q
S
GLL
A
E
I
T
P
D
K
A
F
Q
D
K
L
Y
P
F
T
W
D
A
V
RYNGKLI
A
Y
P
I
A
V
E
A
L
S
L
I
Y
N
KDLLPNPPKTWEE
I
P
A
L
D
K
E
L
KSALMFNLQEPYFT
W
P
L
I
A
AD
G
G
Y
A
F
KYENGKYDIKDVGVDN
A
G
A
K
A
G
L
T
F
L
V
D
L
I
K
N
KHMNADTD
Y
S
I
A
E
A
A
F
N
K
GETA
M
T
I
N
G
PWA
W
S
N
I
D
T
S
KVN
Y
G
V
T
V
L
P
TFKGQPSKPFVGVL
S
A
G
I
N
AASPN
K
E
L
A
K
E
F
L
E
NYLLT
D
E
G
L
E
A
V
N
K
D
KPLGAVAL
K
S
Y
E
E
E
L
AKD
P
R
I
A
A
T
M
E
N
A
Q
K
G
EIMPNIPQ
M
S
A
F
W
Y
A
V
R
T
A
V
I
N
A
---
A
S
G
R
Q
T
V
D
A
----------------------------
A
L
A
A
A
Q
T
N
A
A
A
M
Q
Q
P
K
R
N
-
F
D
L
Y
K
L
I
T
D
K
Q
I
D
---
F
Q
V
A
D
L
I
Q
-
D
E
------
Q
S
S
F
V
S
V
R
I
Y
G
Q
F
K
C
F
VP
K
S
T
I
-
Q
E
Q
L
-
D
-
K
-
I
K
N
L
K
E
L
A
K
---
N
K
I
F
K
F
L
S
E
Y
NY
Y
G
Y
F
K
V
QQHQFILNLENAQREASLAVD
D
F
Y
F
I
N
G
R
I
Y
K
T
N
HD
I
L
I
L
Q
A
H
H
V
Y
Q
M
QKPTLQLLQA