@TOME V2.3
(Nov 2016)
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-04-30 )
GTSDLCGLAETAFGECTAYVAGGEPAVSRRCCRALGDIRDLAATAAERRAVCACILSEMLAAGDGRVDSGRAAGLPAACNVRVGFIPTSPNFNCFRVR
Atome Classification :
(20 SA)
-----------------------------------.........--10.---.......20-----------.---------------------.----.----.---.------------.--------------.------------.-----.30........40...------------.....50.--..-.....60----.----.---------..---.----.--------.-----.70....--....80...-.-.--...90.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------GTSDLCGLA--ETA---FGECTAYV------------A---------------------G----G----E---P------------A--------------V------------S-----RRCCRALGDIRDLAAT------------AAERRAVC--AC-ILSEMLA----A----G---------DG---R----V--------D-----SGRAAGL--PAACNVRVG-F-I--PTSPNFNCFRVR
25
HHSearch
89.11
29%
-119
- C2 -
1BWO
2
NLTP1_WHEAT
A:
[1-90]
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V
--
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--------
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------------
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--------------
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------------
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-----
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Q
C
C
D
G
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N
L
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N
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------------
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Q
S
A
C
--
N
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-
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--
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----
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----
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---------
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H
---
N
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--------
N
-----
E
D
N
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--
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N
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-
Y
----
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-
21
HHSearch
87.44
32%
-96
- C2 -
1AFH
-
NLTP_MAIZE
A:
[1-93]
-------------------------------------
A
I
S
C
G
Q
V
--
A
S
A
---
I
A
P
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------------
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----
G
---
S
------------
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--------------
P
------------
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-----
A
G
C
C
S
G
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R
S
L
N
N
A
A
R
T
------------
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A
D
R
R
A
A
C
--
N
C
-
L
K
N
A
--
A
----
A
----
G
---------
V
S
---
G
----
L
--------
N
-----
A
G
N
A
A
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--
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K
C
G
V
S
I
P
-
Y
----
T
I
S
T
S
T
D
C
S
R
V
N
11
SP3
86.59
28%
-116
- C2 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------
A
I
S
C
G
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V
--
A
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A
---
I
A
P
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I
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Y
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----
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----
G
---
S
------------
G
--------------
P
------------
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-----
A
G
C
C
S
G
V
R
S
L
N
N
A
A
R
T
------------
T
A
D
R
R
A
A
C
--
N
C
-
L
K
N
A
A
A
----------
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---------
V
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---
G
----
L
--------
N
-----
A
G
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A
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--
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I
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-
Y
----
T
I
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S
T
D
C
S
R
V
N
24
HHSearch
85.12
33%
-112
- C2 -
2ALG
2
NLTP1_PRUPE
A:
[1-92]
-------------------------------------
M
I
T
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--
S
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S
---
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A
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---------------------
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----
G
----
G
----------------
A
--------------
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------------
P
-----
P
A
C
C
N
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N
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------------
T
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A
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-
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--
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----
A
----
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---------
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---
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----
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--------
N
-----
P
N
N
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A
A
L
--
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-
Y
----
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N
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K
23
HHSearch
84.82
29%
-101
- C2 -
1T12
-
NLTP1_TOBAC
A:
[1-91]
-------------------------------------
A
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--
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N
---
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A
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----
T
----
G
-------------------------------
P
------------
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-----
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------------
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-
L
K
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A
A
------
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----
A
---------
I
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---
G
----
I
--------
N
-----
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G
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A
A
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--
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I
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-
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----
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K
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Q
26
HHSearch
79.20
27%
-113
- C2 -
1SIY
-
NLTP1_VIGRR
A:
[1-91]
--------------------------------------
M
T
C
G
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--
Q
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N
---
L
A
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---------------------
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----
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----
G
----------------
V
--------------
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------------
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-----
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------------
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-
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K
A
A
--
A
----
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----
A
---------
V
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---
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----
I
--------
N
-----
P
N
N
A
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--
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-
Y
----
K
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N
C
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I
N
2
Fugue
76.57
28%
-133
- C2 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
------------------------------------
A
I
D
L
C
G
M
S
--
Q
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E
---
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E
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---------------------
K
E---
N
----
P
---
T
------------
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------------
S
-----
Q
P
C
C
T
A
L
Q
H
A
D
----------------------
F
A
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--
L
C
-
G
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K
N
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W
----
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----
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---
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--------
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-----
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A
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A
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--
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-----------
A
N
A
P
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C
----
35
HHSearch
74.51
35%
-160
- C2 -
1BEA
-
ITRF_MAIZE
A:
[15-109]
-----------------------------------------------
N
P
---
L
P
S
C
R
W
Y
V
------------
T
S
R
TC-----------------
G
----
I
----
G
---
P
------------
R
--------------
L
------------
P
W
P
E
L
K
R
R
C
C
R
E
L
A
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I
--------------------
P
A
Y
C
R
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--
T
A
-
L
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I
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M
D
G
----
A
----
I
P
P
-------
G
P
DAQ
L
E
G
R
-
L
E
D
LPGCP
R
E
V
Q
---
R
G
F
A
A
T
L
VT
E
A
E
C
N
L
A
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I
------------------
27
HHSearch
70.37
29%
-130
- C2 -
2RKN
2
DIRL1_ARATH
A:
[2-75]
-------------------------------------
I
D
L
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G
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--
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---
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N
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T-----------
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--------------
P
------------
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-----
Q
P
C
C
T
A
L
Q
H
A
--------------------
D
F
A
C
L
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--
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-
K
N
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P
W
-
L
----
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---------
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----
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----
V
--------
D
-----
P
E
L
A
S
A
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--
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G
L
A
N
A
-
P
----------------
3
Fugue
63.89
21%
-64
- C2 -
1PSY
-
2SS_RICCO
A:
[1-125]
-----------------------A
E
F
M
E
S
K
G
E
R
E
G
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E
VQ
R
K
D
---
L
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------------
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S
S
R
R
S
T
GEEVLRMPGDENQ
Q
----
Q
----
E
---
S
------------
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--------------
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------------
L
-----
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N
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N
-------
32
HHSearch
61.10
20%
-136
- C2 -
1SM7
-
?
A:
[13-107]
-----------------------------------------------
Q
H
---
L
R
A
C
Q
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I
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---------------------
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----
Q
LAG-
S
---
P
F
S
E
NQWGPQQGP
S
--------------
L
------------
R
-----
E
Q
C
C
N
E
L
Y
Q
E
--------------------
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Q
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A
A
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S
----
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VQGQ-----
H
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---
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QST
R
----
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--
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P
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I
---------
34
HHSearch
60.14
23%
-146
- C2 -
1B1U
-
IAAT_ELECO
A:
[15-108]
-----------------------------------------------
N
P
---
L
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R
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CG
V
----
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E
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-------
K
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-
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PS
G
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RLLQD
L
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CP--
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A
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--
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10
Fugue
58.12
19%
-85
- C2 -
1S6D
-
2SS8_HELAN
A:
[1-103]
------------------------------P
Y
G
R
G
R
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C
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--
M
E
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A
EM
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KNLGERSQVSP
R
---------------------
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----
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---
E
------------
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6
Fugue
58.12
15%
-95
- C2 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
-------------------------GPMRRERGRQ
G
D
S
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--
V
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VN-
L
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MGEQEQYDSYDIRS----
T
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---
36
HHSearch
55.36
18%
-115
- C2 -
1W2Q
-
CONG_ARAHY
A:
[23-121]
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V
N
---
L
K
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R
I
MG-
E
QE-
Q
------------
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--------------
D
SYDIRSTR
S
S
D
Q
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-----
Q
R
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C
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DR-------
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---
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MV
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--------
8
Fugue
55.33
12%
-87
- C2 -
1P68
-
?
A:
[1-102]
--------------------------------MYG
K
L
N
D
L
L
E
D
L
--
Q
E
V
---
L
K
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L
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K
N
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------------
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---------------------
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----
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---
D
NL
H
---------
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5
Fugue
55.29
23%
-87
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
--------------------------------------
A
G
C
--
N
--
A
G
Q
---
L
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V
C
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A
I
------------
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---------------------
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----
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A
---
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---------------------------
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-----------------------
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37
HHSearch
53.52
16%
-99
- C2 -
1PSY
-
2SS_RICCO
A:
[25-120]
-----------------------------------------------
K
D
---
L
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S
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Y
L
------------
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---------------------
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----
S
S
S
R
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S
T
GE
E
------------
V
LRMPGDENQQQESQ
Q
------------
L
-----
Q
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C
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N
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V
--------------------
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----
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---------
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---
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EE
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-----
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--
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R
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M
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R
----------------
7
Fugue
53.41
12%
-58
* C3 *
1F2U
2
?
B:
[4-148]
A
L
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A
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GKYS
E
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--
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EPTPYL
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I
---------
P
Q
---
V
----
I
--------
L
-----
V
S
H
D
E
E
L
--
K
D
A
A
D
H
V
I
R
-
I
-
S
--
L
E
N
G
S
S
K
V
E
V
V
S
28
HHSearch
49.58
25%
-98
- C2 -
1L6H
-
NLTPX_ORYSJ
A:
[6-66]
-----------------------------------------------
G
Q
---
L
T
V
C
T
G
A
I
------------
A
---------------------
G
----
G
----
A
----------------
R
--------------
P
------------
T
-----
A
A
C
C
S
S
L
R
A
-----------------------
Q
Q
G
C
--
F
C
-
Q
F
A
K
D
P
R
----
Y
----
G
----------
R
---
Y
----
V
--------
N
-----
S
P
N
A
R
K
A
--
V
S
S
C
G
I
A
L
P
------------------
User Run . : Multi Template Modeling Result:
(3 SA)
.........10........20........30........40........50........60........70........80........90.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
GTSDLCGLAETAFGECTAYVAGGEPAVSRRCCRALGDIRDLAATAAERRAVCACILSEMLAAGDGRVDSGRAAGLPAACNVRVGFIPTSPNFNCFRVR
43
55.24
100%
-40
- C- -
M043
-
A:
[3-98]
G
T
S
D
L
C
G
L
A
E
T
A
F
G
E
C
T
A
Y
V
A
G
G
E
P
A
V
S
R
R
C
C
R
A
L
G
D
I
R
D
L
A
A
T
A
A
E
R
R
A
V
C
A
C
I
L
S
E
M
L
A
A
G
D
G
R
V
D
S
G
R
A
A
G
L
P
A
A
C
N
V
R
V
G
F
I
P
T
S
P
N
F
N
C
F
R
V
R
40
46.91
100%
-26
- C- -
M040
-
A:
[3-98]
G
T
S
D
L
C
G
L
A
E
T
A
F
G
E
C
T
A
Y
V
A
G
G
E
P
A
V
S
R
R
C
C
R
A
L
G
D
I
R
D
L
A
A
T
A
A
E
R
R
A
V
C
A
C
I
L
S
E
M
L
A
A
G
D
G
R
V
D
S
G
R
A
A
G
L
P
A
A
C
N
V
R
V
G
F
I
P
T
S
P
N
F
N
C
F
R
V
R
46
46.19
100%
-22
- C- -
M046
-
A:
[3-98]
G
T
S
D
L
C
G
L
A
E
T
A
F
G
E
C
T
A
Y
V
A
G
G
E
P
A
V
S
R
R
C
C
R
A
L
G
D
I
R
D
L
A
A
T
A
A
E
R
R
A
V
C
A
C
I
L
S
E
M
L
A
A
G
D
G
R
V
D
S
G
R
A
A
G
L
P
A
A
C
N
V
R
V
G
F
I
P
T
S
P
N
F
N
C
F
R
V
R