@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 134_tII_ARATH: (2014-05-02 )
VTCSPMQLSPCATAITSSSPPSALCCAKLKEQRPCLCGYMRNPSLRRFVSTPNARKVSKSCKLPIPRC
Atome Classification :
(20 SA)
----------------------------------------------------------------...--.--.--.--..---.10....--.-...--20-.-----........30-----------.-----.-......40.-.-.------------..-----..--------.50------....---.....60...-..-------..-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
----------------------------------------------------------------VTC--S--P--M--QL---SP
C
A
T
AI--T-SSS--P--
P
-----
S
A
L
C
C
A
K
L
K
E-----------Q-----R-P
C
L
C
GYMRN-P-
S
------------
L
R
-----
R
F
--------VS-------TP
N
A
---
R
K
V
SKSCKLP-IP-------RC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
94.85
39%
-100
- C4 -
1N89
1
NLT2G_WHEAT
A:
[1-67]
-----------------------------------------------------------------
A
C
--
Q
--
A
--
S
--
Q
L
---
A
V
C
A
S
A
I
--
L
-
S
G
A
--
K
--
P
-----
S
G
E
C
C
G
N
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
Y
A
K
D
-
P
-
T
------------
Y
G
-----
Q
Y
--------
I
R
-------
S
P
H
A
---
R
D
T
L
T
S
C
G
L
A
-
V
P
-------
H
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
92.69
38%
-106
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-68]
----------------------------------------------------------------
A
G
C
--
N
--
A
--
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
-
G
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
-
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
-------
S
P
N
A
---
R
K
A
V
S
S
C
G
I
A
-
L
P
-------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
SP3
92.31
38%
-106
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
--
N
--
A
--
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
-
G
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
-
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
-------
S
P
N
A
---
R
K
A
V
S
S
C
G
I
A
-
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
Fugue
92.31
38%
-106
- C4 -
1L6H
-
NLTPX_ORYSJ
A:
[1-69]
----------------------------------------------------------------
A
G
C
--
N
--
A
--
G
--
Q
L
---
T
V
C
T
G
A
I
--
A
-
G
G
A
--
R
--
P
-----
T
A
A
C
C
S
S
L
R
A
-----------
Q
-----
Q
-
G
C
F
C
Q
F
A
K
D
-
P
-
R
------------
Y
G
-----
R
Y
--------
V
N
-------
S
P
N
A
---
R
K
A
V
S
S
C
G
I
A
-
L
P
-------
T
C
H------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
83.30
36%
-90
- C4 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
--------------------------------------------------------------AI
D
L
C
GM
S
--
Q
--
D
--
E
L
---
N
E
C
K
P
A
V
--
S
-
K
E
N
--
P
TS
P
-----
S
Q
P
C
C
T
A
L
Q
H
A----------
D
-----
F
-
A
C
L
C
G
Y
K
N
S
-
P
-
W
------------
L
G
-----
S
F
G-------
V
D
-------
P
E
L
A
---
S
A
L
P
K
Q
C
G
L
A
-
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
83.12
34%
-101
- C4 -
2RKN
2
DIRL1_ARATH
A:
[9-77]
------------------------------------------------------------------------
Q
--
D
--
E
L
---
N
E
C
K
P
A
V
--
S
-
K
E
N
PT
S
--
P
-----
S
Q
P
C
C
T
A
L
Q
H
-----------
A
-----
D
F
A
C
L
C
G
Y
K
N
S
-
P
-
W
------------
L
G
-----
S
F
G-------
V
D
-------
P
E
L
A
---
S
A
L
P
K
Q
C
G
L
A
-
N
A
P------
T
C
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
75.58
26%
-95
- C4 -
1T12
-
NLTP1_TOBAC
A:
[3-78]
-----------------------------------------------------------------
T
C
--
G
--
Q
V
T
S
--
N
L
---
A
P
C
L
A
Y
L
--
R
-
N
T
G
-----
P
-----
L
G
R
C
C
G
G
V
K
A
L
V
N
S
A
RT
T
E
D
R
Q
-----
I
-
A
C
T
C
--
L
K
S
-
A
-
A
-------------
G
-----
A
I
SG------
I
N
-------
L
G
K
A
---
A
G
L
P
S
T
C
G
V
N
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
75.28
27%
-93
- C4 -
2ALG
2
NLTP1_PRUPE
A:
[2-79]
----------------------------------------------------------------
I
T
C
--
G
--
Q
--
V
S
S
S
L
---
A
P
C
I
P
Y
V
--
R
-
G
G
G
--
A
--
V
-----
P
P
A
C
C
N
G
I
R
N
V
N
N
L
A
RT
T
P
D
R
Q
-----
A
-
A
C
N
C
--
L
K
Q
-
L
-
S
-------------
A
-----
S
V
PG------
V
N
-------
P
N
N
A
---
A
A
L
P
G
K
C
G
V
S
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
71.54
26%
-74
- C4 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
-----------------------------------------------------------------
S
C
--
G
--
Q
V
A
S
--
A
I
---
A
P
C
I
S
Y
A
--
R
-
G
Q
G
--
S
G-
P
-----
S
A
G
C
C
S
G
V
R
S
L
N
N
A
A
RT
T
A
D
R
R
-----
A
-
A
C
N
C
--
L
K
N
-
A
-
A
-------------
A
-----
G
V
SG------
L
N
-------
A
G
N
A
---
A
S
I
P
S
K
C
G
V
S
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
69.91
23%
-65
- C4 -
1SIY
-
NLTP1_VIGRR
A:
[2-78]
-----------------------------------------------------------------
T
C
--
G
--
Q
V
Q
G
--
N
L
---
A
Q
C
I
G
F
L
--
Q
-
K
G
G
--
V
--
V
-----
P
P
S
C
C
T
G
V
K
N
I
L
NSSRTTADR
R
-----
A
-
V
C
S
C
L
K
A
A
A
-
G
-
A
------------
V
R
------
G
--------
I
N
-------
P
N
N
A
---
E
A
L
P
G
K
C
G
V
N
-
I
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
68.54
25%
-98
- C4 -
1HYP
-
HPSE_SOYBN
A:
[10-73]
------------------------------------------------------------------------------
D
L
---
S
I
C
L
N
I
L
GG
S
-
L
G
T
-----------
V
D
D
C
C
A
L
I
G
G
-----------
L
G
D
I
E
A
I
-
V
C
L
C
I
Q
L
R
A
----------------
L
G
-----
I
---------
L
N
-------
L
N
R
N
L
--
Q
L
I
L
N
S
C
G
R
S
-
Y
P
-------
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
SP3
66.96
22%
-70
- C4 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
---------------------------------------------------------------A
I
S
C
--
G
Q
V
A
--
S
--
A
I
---
A
P
C
I
S
Y
A
--
R
-
G
Q
G
--
S
G-
P
-----
S
A
G
C
C
S
G
V
R
S
-----------
L
-----
N
-
N
A
----
A
R
T
-
T
-
A
D
R
R
A
A
C
N
C
L
K
N
A
A
A
-----
G
V
SG------
L
N
-------
A
G
N
A
---
A
S
I
P
S
K
C
G
V
S
-
I
P
YTISTST
D
C
SRVN---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
64.17
25%
-58
- C4 -
1BWO
2
NLTP1_WHEAT
A:
[8-78]
---------------------------------------------------------------------------
S
--
L
V
---
R
P
C
L
S
Y
V
--
Q
-
G
G
P
--
G
--
P
-----
S
G
Q
C
C
D
G
V
K
N
L
H
N
Q
ARS
Q
S
D
R
Q
-----
S
-
A
C
N
C
L
K
G
I
A
-
R
-
G
------------
I
H
------
N
--------
L
N
-------
E
D
N
A
---
R
S
I
P
P
K
C
G
V
N
-
L
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
58.18
22%
-58
- C4 -
3OB4
-
?
A:
[427-485]
------------------------------------------------------------------------------------------------------
H
-----
Q
E
R
C
C
N
E
L
N
E
-----------
F
EN---
N
Q
R
C
M
C
E
A
L
Q
Q
-
I
-
M
------------
E
N
-----
Q
S
DRL-----
Q
G
RQ
Q
E
Q
Q
F
K
R
E
L
---
R
N
L
P
Q
Q
C
G
L
R
-
A
P
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
35
SP3
55.31
11%
-62
- C4 -
1PS6
1
PDXA_ECOLI
A:
[1-328]
V
K
T
Q
R
V
V
I
T
PGEPAGI
G
P
D
L
V
V
Q
L
A
QREWP
V
E
L
V
V
CAD
A
T
L
L
T
N
R
A
A
M
L
G
L
P
L
T
L
R
P
YSPN
S
P
A
Q
P
Q
--
T
--
A
--
G
--
T
L
T
L
L
P
V
A
L
R
A
P
--
V
-
T
A
G
--
Q
--
L
-----
A
V
E
N
G
H
Y
V
V
E
-----------
T
-----
L
-
A
R
A
C
D
G
C
L
N
-
G
-
E
------------
F
A
-----
A
L
--------
I
T
-------
G
P
V
H
---
K
G
V
I
N
D
A
G
I
P
-
F
T
-------
G
H
T
E
F
F
E
E
R
S
QAK
K
V
V
M
M
L
A
TEE
L
R
V
A
L
ATTHLPLRDIADAIT
P
A
L
L
H
E
V
I
A
I
L
H
H
D
L
R
TKFGIA
E
P
R
I
L
V
C
G
LNPHAGEGGHMGTEEIDT
I
I
P
V
L
N
E
L
R
A
Q
G
M
K
L
N
G
PLPADTLFQPKYLDNAD
A
V
L
A
MYHDQG
L
P
V
L
K
Y
Q
GFGR
G
V
N
I
T
L
GLP
F
I
R
T
S
V
DHGTALELAGRGKADV
G
S
F
I
T
A
L
N
L
A
I
K
M
I
V
N
T
Q
28
SP3
52.20
14%
-78
- C4 -
1U78
-
TC3A_CAEEL
A:
[2-104]
-------------------------------------------------------------PRG
S
A
L
--
S
--
D
--
T
--
E
R
---
A
Q
-
L
D
V
M
--
K
-
L
L
N
--
V
--
S
-----
L
H
E
M
S
R
K
I
S
R
-----------
S
-----
R
-
H
C
I
R
V
Y
L
K
D
-
P
V
S
------------
Y
G
-----
T
S
KRAPRRKA
L
S
-------
V
R
D
E
---
R
N
V
I
R
A
A
S
N
S
-
C
K
-------
T
A
R
D
I
R
N
E
L
QLSAS
K
R
T
I
L
N
V
I
K
R
S
G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
50.10
11%
-87
- C4 -
3ZR8
1
?
X:
[1-65]
----------------------------------------------------------------
G
P
T
--
E
--
K
--
A
--
A
V
---
K
K
M
A
K
A
I
--
M
-
A
D
P
--
S
--
K
-----
A
D
D
V
Y
Q
K
W
A
D
-----------
K
-----
G
-------
Y
T
L
-
T
-
Q
------------
L
S
-----
D
F
--------
L
K
-------
S
K
T
R
GKY
D
R
V
Y
N
G
Y
M
T
Y
-
R
D
-------
Y
V
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
49.19
16%
-75
- C4 -
1KNG
-
CYCY_BRADU
A:
[50-193]
---------------------------------------------------RPAPQ
T
A
L
P
P
LEG
L
Q
A
--
D
--
N
--
V
--
Q
V
---
P
G
L
D
P
A
A
--
F
-
K
G
---
K
--
V
S
L
V
N
V
W
A
S
W
C
V
P
C
H
D
-----------
E
-----
A
-
P
L
L
T
E
L
G
K
D
-
K
-
R
------------
F
Q
L
V
G
I
N
Y
K
--------
D
A
-------
A
D
N
A
---
R
R
F
L
G
R
Y
G
N
P
-
F
G
-------
R
V
G
V
DANG
R
A
S
I
E
W
GVYGVP
E
T
F
V
V
G
REGTIV
Y
K
L
V
G
PIT
P
D
N
L
R
SV
L
L
P
Q
M
E
K
A
L-------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
47.00
14%
-64
- C4 -
1S6D
-
2SS8_HELAN
A:
[1-103]
--------------------------------------P
Y
G
R
G
R
T
E
SG
C
Y
Q
Q
M
E
E
A
EML
N
H
C
G
M
Y
L
M
--
K
--
N
--
L
--
G
E
---
R
S
Q
V
S
P
R
--
M
-
R
E
E
--
D
--
H
-----
K
Q
L
C
C
M
Q
L
K
N
L----------
D
-----
E
-
K
C
M
C
P
A
I
M
M
-
M
--------------
L
N
-----
E
P
--------
M
W
-------
I
R
M
R
---
D
Q
V
M
S
M
A
H
N
L
-
P
I
-------
E
C
NLMSQPCQM----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
SP3
44.60
8%
-97
* C4 *
1F9M
-
TRXF_SPIOL
A:
[10-121]
--------------------------------------------------------MEAIVG
K
V
T
E
V
--
N
--
K
--
D
--
T
F
------
W
P
I
V
--
K
A
A
G
D
--
K
--
P
V
V
L
D
M
F
T
Q
W
C
G
P
C
K
A
-----------
M
-----
A
-
P
K
Y
E
K
L
A
E
E
Y
L
-
D
V
I
----------
F
L
-----
K
L
--------
D
C
-------
N
Q
E
N
---
K
T
L
A
K
E
L
G
I
R
V
V
P
-------
T
F
K
I
L
K
ENSVV
G
E
V
T
G
AK
Y
D
K
L
L
E
A
I
Q
A
A
R
S--------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60.......
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
VTCSPMQLSP
C
A
T
AITSSSP
P
S
A
L
C
C
A
K
L
K
EQRP
C
L
C
GYMRNP
S
L
R
R
F
VSTP
N
A
R
K
V
SKSCKLPIPRC
40
96.39
100%
-115
- C- -
M040
-
A:
[1-90]
V
T
C
S
P
M
Q
L
S
P
C
A
T
A
I
T
S
S
S
P
P
S
A
L
C
C
A
K
L
K
E
Q
R
P
C
L
C
G
Y
M
R
N
P
S
L
R
R
F
V
S
T
P
N
A
R
K
V
S
K
S
C
K
L
P
I
P
R
C
41
95.67
100%
-108
- C- -
M041
-
A:
[1-90]
V
T
C
S
P
M
Q
L
S
P
C
A
T
A
I
T
S
S
S
P
P
S
A
L
C
C
A
K
L
K
E
Q
R
P
C
L
C
G
Y
M
R
N
P
S
L
R
R
F
V
S
T
P
N
A
R
K
V
S
K
S
C
K
L
P
I
P
R
C