@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : 585_tV_MAIZE: (2014-05-11 )
AGECGRVPVDQVALKLAPCAAATQNPRAAVPPSCCAQVRAIGRVPKCLCAVMLSDTARKAGVKPAVAMTIPKRCAIANRPVGYKCGPYTLP
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------.....---....10----...--..---..--------..20-------------......-----------------.---------------.-----------------30-........40.---.--------.-----.-------....50-------...---...------------.-----.------------60.---------.---.-.-.-----..---..-70----------......--------...80........----90.----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------AGECG---RV
P
V
D
-----
Q
V
A
--
L
K---LA--------PCAA-------------ATQNPR-----------------A---------------A-----------------V
P
-
P
S
C
C
A
Q
V
R
A
IG---
R
--------
V
-----
P
-------
K
C
L
C
A
V
-------
M
L
S
---
D
T
A
------------
R
-----K------------A-G---------V---K-P-
A
-----
V
A
---
M
T-I-----------
P
K
R
CAI--------ANRPVGYKCGPYT----L-P----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
SP3
84.77
21%
-123
- C3 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
-------------------------------------------------------------------------------------
A
I
S
C
G
-----
Q
V
A
--
S
A
---
I
A
--------
P
C
I
S
-------------
Y
A
R
G
Q
G
-----------------
S
---------------
G
-----------------
P
S
-
A
G
C
C
S
G
V
R
S
L
N
N
A
A
R
--------
T
-----
T
A
D
R
----
R
A
A
C
N
C
-------
L
K
N
---
A
A
A
------------
G
-----
V
------------
S
-
G
---------
L
---
N
-
A
-
G
-----
N
A
---
A
S
-
I
-----------
P
S
K
C
G
V
--------
S
---
I
P
Y
T
I
S
T
S
T
DCSR
V
-
N
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
Fugue
76.71
24%
-110
- C3 -
1HSS
-
IAA1_WHEAT
A:
[5-124]
-------------------------------------------------------------------------------
M
C
Y
PGQ
A
F
Q
V
P
AL
P
A
C
R
P
L
--
L
R
---
L
Q
--------
C
N
G
S
---------------
Q
V
P
------------------
E
---------------
A
-----------------
V
L
-
R
D
C
C
Q
Q
L
A
H
I
S
---
E
--------
W
-----
C
-------
R
C
G
A
L
Y
-------
S
M
L
---
D
S
-
M
Y
K
E
HGAFPRCR
R
-----
E
------------
V
-
V
---------
K
---
L
-
T
-
A
-----
A
S
---
I
T
-
A
-------------
V
C
R
L
P
I
V
VDASG
D
G
A
Y
V
C
K
D
V
A
A
Y
P
----
D
-
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
73.99
30%
-108
- C3 -
1T12
-
NLTP1_TOBAC
A:
[3-78]
---------------------------------------------------------------------------------------
T
C
G
-----
Q
V
T
--
S
N
---
L
A
--------
P
C
L
A
-------------
Y
L
R
N
T
G
---------------------------------------------------
P
L
-
G
R
C
C
G
G
V
K
A
L
V
---
N
--------
S
A
----
R
T
T
E
D
R
Q
I
A
C
T
C
---------
L
K
S
----
A
A
------------
G
-----
A
------------
I
S
G
---------
I
---
N
-
L
-
G
-----
K
A
---
A
G
-
L
-----------
P
S
T
C
G
V
--------
N
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
73.66
31%
-106
- C3 -
2ALG
2
NLTP1_PRUPE
A:
[3-79]
---------------------------------------------------------------------------------------
T
C
G
-----
Q
V
S
--
S
S
---
L
A
--------
P
C
I
P
-------------
Y
V
R
G
G
------------------
G
---------------
A
-----------------
V
P
-
P
A
C
C
N
G
I
R
N
V
N
---
N
L
A
RT
T
P
D
R
Q
-----
A
-------
A
C
N
C
---------
L
K
Q
----
L
S
------------
A
-----
S
------------
V
P
G
---------
V
---
N
-
P
-
N
-----
N
A
---
A
A
-
L
-----------
P
G
K
C
G
V
--------
S
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
72.53
26%
-97
- C3 -
1AFH
-
NLTP_MAIZE
A:
[3-80]
---------------------------------------------------------------------------------------
S
C
G
-----
Q
V
A
--
S
A
---
I
A
--------
P
C
I
S
-------------
Y
A
R
G
Q
G
-----------------
S
---------------
G
-----------------
P
S
-
A
G
C
C
S
G
V
R
S
L
N
---
N
A
A
R-----
T
T
A
D
R
R
A
-------
A
C
N
C
---------
L
K
N
----
A
A
------------
A
-----
G
------------
V
S
G
---------
L
---
N
-
A
-
G
-----
N
A
---
A
S
-
I
-----------
P
S
K
C
G
V
--------
S
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
72.19
32%
-89
- C3 -
1SIY
-
NLTP1_VIGRR
A:
[2-78]
---------------------------------------------------------------------------------------
T
C
G
-----
Q
V
Q
--
G
N
---
L
A
--------
Q
C
I
G
-------------
F
L
Q
K
G
------------------
G
---------------
V
-----------------
V
P
-
P
S
C
C
T
G
V
K
N
I
L
---
N
SSRTTADR
R
-----
A
-------
V
C
S
C
L
---------
K
----
A
A
A
------------
G
-----
A
------------
V
R
G
---------
I
---
N
-
P
-
N
-----
N
A
---
E
A
-
L
-----------
P
G
K
C
G
V
--------
N
I
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
Fugue
70.46
30%
-72
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
----------------------------------------------------------------------------A
I
D
L
C
G
-------------
M
S
Q
--
D
E
---
L
N
--------
E
C
K
P
-------------
A
V
S
K
E
N
-----------------
P
---------------
T
-----------------
S
P
S
Q
P
C
C
T
A
L
Q
H
A
D
------------------
F
-------
A
C
L
C
G
Y
-------
K
N
S
---
P
W
L
------------
G
-----
S
------------
F
-
G
---------
V
---
D
-
P
-
E
-----
L
A
---
S
A
-
L
-----------
P
K
Q
C
G
L
--------
A
N
A
P
---
T
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
41
SP3
70.35
18%
-120
* C3 *
1HYP
-
?
?:
[6-80]
------------------------------------------------------------------------------
P
S
C
P
-------------------
D
---
L
S
--------
I
C
L
N
-------------
I
L
G
G
S
L
-----------------
G
---------------
T
-----------------
V
--
D
D
C
C
A
L
I
G
G
L
G
D
I
-
E
--------
A
-----
I
-------
V
C
L
C
---------------
I
Q
L
------------
R
-----
A
------------
L
-
G
---------
I
L--
N
-
L
-
N
-----
R
N
---
L
Q
L
I
-----------
L
N
S
C
G
---------
R
S
Y
P
S
N
A
T
C
P
R
T
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
HHSearch
68.05
18%
-135
- C3 -
1SM7
-
?
A:
[14-104]
-----------------------------------------------------------------------------------------------------
H
---
L
R
--------
A
C
Q
Q
-------------
W
I
R
Q
Q
L
-----------------
A
G
S
P
F
S
E
NQWGPQQGP
S
-----------------
L
R
-
E
Q
C
C
N
E
L
Y
Q
E
-------------
D
-----
Q
-------
V
C
V
C
P
T
-------
L
K
Q
---
A
A
K
------------
S
V
RVQG
Q
------------
H
-
G
PFQST----
R
---
I
-
Y
-
Q
-----
I
A
---
K
N
-
L
-----------
P
N
V
C
N
M
--------
K
Q
--
I
G
T
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
HHSearch
67.25
19%
-108
- C3 -
1BEA
-
ITRF_MAIZE
A:
[16-109]
-----------------------------------------------------------------------------------------------------
P
---
L
P
--------
S
C
R
W
-------------
Y
V
T
S
R
T
CGIG-------------
P
---------------
R
LP
W
P
E
------------
L
K
-
R
R
C
C
R
E
L
A
D
I
-------------
P
-----
A
-------
Y
C
R
C
T
A
-------
L
S
I
L
M
D
G
A
I
------------
P
-----
P
G
PDAQL
E
G
R
---
L
-
E
D
LPGCP
R
E
-
V
---
Q
-
R
-
G
-----
F
A
---
A
T
-
L
VT---------
E
A
E
C
N
L
--------
A
T
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
HHSearch
65.91
22%
-113
- C3 -
1B1U
-
IAAT_ELECO
A:
[16-110]
-----------------------------------------------------------------------------------------------------
P
---
L
D
--------
S
C
R
W
-------------
Y
V
S
T
R
T
CGVGPR-----------
L
A
T
Q
------------
E
-----------------
M
K
-
A
R
C
C
R
Q
L
E
A
I
-------------
P
-----
A
-------
Y
C
R
C
E
A
-------
V
R
I
L
M
D
G
V
V
------------
T
-----
P
SG
Q
H
E
G
RLLQDL
P
-
G
CP
R
Q
-----
V
Q
--
R
A
F
-
A
-----
P
K
---
L
V
-
T
-----------
E
V
E
C
N
L
--------
A
T
I
H
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
64.29
26%
-85
- C3 -
2RKN
2
DIRL1_ARATH
A:
[1-75]
---------------------------------------------------------------------------------
A
---
I
D
L
C
G
-----
M
S
Q
--
D
E
---
L
N
--------
E
C
K
P
-------------
A
V
S
K
E
N
P----------------
T
---------------
S
-----------------
P
S
-
Q
P
C
C
T
A
L
Q
H
A
-------------
D
-----
F
-------
A
C
L
C
G
Y
-------
K
N
S
---
P
W
L
------------
G
-----
S
------------
F
-
G
---------
V
---
D
-
P
-
E
-----
L
A
---
S
A
-
L
-----------
P
K
Q
C
G
L
--------
A
N
A
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
39
SP3
62.17
16%
-101
- C4 -
1GUY
1
MDH_CHLAA
A:
[1-306]
M
R
K
K
I
S
I
I
G
AG
F
V
G
S
T
T
A
H
W
L
A
A
K
EL
G
D
I
V
L
L
D
IVEG
V
P
Q
G
K
A
L
D
L
Y
E
A
SPIEG
F
D
V
R
V
T
G
T
NNYADTANSD
V
I
V
V
T
S
G
A
L
I
---
K
V
N
A
D
-----
I
T
R
--
A
C
---
I
S
--------
Q
A
A
P
-------------
L
S
P
N
A
V
I
I
M
V-------------
N
---------------
N
-----------------
P
L
-
D
A
M
T
Y
L
A
A
E
V
S
---
G
--------
F
-----
P
KE-----
R
V
I
G
Q
A
G
V
L
D
A
A
R
Y
R
T
---
F
I
A
------------
M
-----
E
------------
A
-
G
---------
V
---
S
-
V
E
D
-----
V
Q
---
A
M
-
L
M
G
G
H
GDE
M
V
P
L
P
R
F
S
T
I
--------
S
G
I
P
V
-----
S
E
F
----
I
-
A
P
D
R
L
A
Q
I
V
E
R
T
R
K
G
G
G
E
I
V
N
L
L
K
TGSAY
Y
A
P
A
A
A
T
A
Q
M
V
E
A
V
L
K
DKK
R
V
M
P
V
AAYLTGQYGLNDIY
F
G
V
P
V
ILGAGGVE
K
I
L
E
L
PLN
E
E
E
M
A
L
L
N
A
S
A
K
A
V
R
A
T
L
D
T
L----------------------------------------------------------------------------------------------------
5
Fugue
61.85
14%
-85
- C3 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
-----------------------------------------------------------------------GPMRRE
R
G
R
Q
G
---
D
S
S
S
C
-----
E
R
Q
--
V
D
R
VN
L
K
--------
P
C
E
Q
-------------
H
I
M
Q
R
I
MGEQEQYDSYDIRSTR
S
S
---------------
D
-----------------
Q
Q
-
Q
R
C
C
D
E
L
N
E
M
E
---
N
--------
T
-----
Q
-------
G
C
M
C
E
A
-------
L
Q
Q
---
I
M
E
N
Q
CDRLQDR---
Q
-----
M
------------
V
-
Q
---------
Q
---
F
-
K
-
R
-----
E
L
---
M
S
-
L
-----------
P
Q
Q
C
N
F
--------
R
A
P
Q
---
R
C
D
L
D
V
----
S
-
G
GRCS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
60.79
21%
-107
- C3 -
1BWO
2
NLTP1_WHEAT
A:
[2-78]
---------------------------------------------------------------------------------------
D
C
G
-----
H
V
D
--
S
L
---
V
R
--------
P
C
L
S
-------------
Y
V
Q
G
G
------------------
P
---------------
G
-----------------
P
S
-
G
Q
C
C
D
G
V
K
N
L
H
---
N
Q
AR-----
S
Q
S
D
R
Q
S
-------
A
C
N
C
L
K
-------
G
I
A
------------------
R
-----
G
------------
I
H
N
---------
L
---
N
-
E
-
D
-----
N
A
---
R
S
-
I
-----------
P
P
K
C
G
V
--------
N
L
P
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
59.91
18%
-125
- C3 -
1HYP
-
HPSE_SOYBN
A:
[10-79]
-----------------------------------------------------------------------------------------------------
D
---
L
S
--------
I
C
L
N
-------------
I
L
G
G
-
S
-----------------
L
---------------
G
-----------------
T
V
-
D
D
C
C
A
L
I
G
G
L
G
---
D
I
E
------
A
-----
I
-------
V
C
L
C
I
Q
-------
L
R
A
------------------
L
-----
G
------------
I
-----------
L
---
N
-
L
-
N
-----
R
N
---
L
Q
-
L
I
----------
L
N
S
C
G
R
---------
S
Y
P
S
N
A
T
C
P
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
HHSearch
59.63
25%
-93
- C3 -
1HSS
-
IAA1_WHEAT
A:
[16-105]
-----------------------------------------------------------------------------------------------------
A
---
L
P
--------
A
C
R
P
-------------
L
L
R
L
Q
C
N
GSQ-------------
V
P
E
-------------
A
-----------------
V
L
-
R
D
C
C
Q
Q
L
A
H
I
-------------
S
-----
E
-------
W
C
R
C
G
A
-------
L
Y
S
---
M
L
D
------------
S
M
Y
K
--
E
------------
H
--GAFPRCR
R
E
V
---
V
-
K
-
L
-----
T
A
---
A
S
-
I
-----------
T
A
V
C
R
L
--------
P
I
V
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
SP3
58.99
18%
-106
- C3 -
1ML8
-
YHFA_ECOLI
A:
[1-134]
-------------------------------------------------M
Q
A
R
V
K
W
VEGL
T
F
L
G
E
S
ASG
H
Q
I
L
M
D
GN
S
G
D
K
A
---
P
S
P
M
E
-----
M
V
L
--
M
A
---
A
G
--------
G
C
S
A
I
D
V
V
S
--------
I
L
Q
K
G
R
-----------------
Q
---------------
D
-----------------
V
V
-
D
--
C
E
V
K
L
T
S
E
---
R
--------
R
-----
E
-------
R
L
F
T
H
I
-------
N
L
H
---
F
I
V
------------
T
-----
G
------------
R
-
D
---------
L
---
K
-
D
-
A
A
V
A
R
A
V
D
---
L
S
-
A
-----------
E
K
Y
C
-------------
S
V
A
L
M
L
E
K
-
A
----
V
-
N
I
T
H
S
Y
E
V
V
A
A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
40
SP3
58.83
21%
-76
- C3 -
1D0V
2
COBT_SALTY
A:
[4-349]
------------------------------------------------L
H
A
L
L
R
D
IPAPD
A
E
A
M
A
R
T
Q
Q
H
I
D
G
LLKP
P
G
S
L
G
---
R
--
L
E
-----
T
L
A
--
V
Q
---
L
A
G
MPGLNGT
P
Q
V
G
E
K
A
V
L
V
M
C
A
D
H
GV
W
D
E
G
V
A
-----------------
V
---------------
S
-----------------
P
K
-
I
V
T
A
I
Q
A
A
N
M
T
---
R
--------
G
-----
T
-------
T
G
V
C
---------------
V
L
A
------------
A
-----
Q
------------
A
-
G
---------
A
---
K
-
V
-
H
-----
V
I
D
VG
I
D
-
A
-----------
E
P
I
P
G
V
--------
V
N
M
R
V
A
R
G
C
G
N
I
A
----
V
G
P
AMS
R
L
Q
A
E
A
L
L
L
E
V
S
R
Y
A
C
D
L
A
Q
R
GVT
L
F
G
V
G
E
L
G
M
A
N
T
T
P
A
A
A
M
V
S
V
F
T
GSDAKEVVGIGANLPPSR
I
D
N
K
V
D
V
V
R
R
A
I
A
I
N
QPNPRD
G
I
D
V
L
S
K
VGG
F
D
L
V
G
M
T
G
V
M
L
G
A
A
R
C
G
L
P
V
L
L
D
G
F
L
S
Y
S
A
A
L
A
A
C
Q
I
APAVRPY
L
I
P
S
H
FSAEKG
A
R
I
A
L
A
H
L
SMEPYLHMAMRLGEG
S
G
A
A
L
A
M
P
I
V
E
A
A
C
A
M
F
H
NMGELAASNIVLP
21
HHSearch
58.57
14%
-92
- C3 -
1W2Q
-
CONG_ARAHY
A:
[16-117]
----------------------------------------------------------------------------------------
C
E
-----
R
Q
V
D
R
V
N
---
L
K
--------
P
C
E
Q
-------------
H
I
M
Q
R
I
-----------------
M
---------------
G
EQEQYDSYDIRSTR
S
S
D
Q
Q
-
Q
R
C
C
D
E
L
N
E
M
E
---
N
--------
T
-----
Q
-------
G
C
M
C
E
A
-------
L
Q
Q
---
I
M
E
N
Q
C---------
D
-----
R
------------
L
Q
D
RQ-------
M
V
Q
Q
F
-
K
-
R
-----
E
L
---
M
S
-
L
-----------
P
Q
Q
C
N
F
--------
R
--
A
P
Q
R
C
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(4 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
AGECGRV
P
V
D
Q
V
A
L
KLAPCAAATQNPRAAV
P
P
S
C
C
A
Q
V
R
A
IG
R
V
P
K
C
L
C
A
V
M
L
S
D
T
A
R
KAGVKP
A
V
A
M
TI
P
K
R
CAIANRPVGYKCGPYTLP
47
95.21
100%
-105
- C- -
M047
-
A:
[1-162]
A
G
E
C
G
R
V
P
V
D
Q
V
A
L
K
L
A
P
C
A
A
A
T
Q
N
P
R
A
A
V
P
P
S
C
C
A
Q
V
R
A
I
G
R
V
P
K
C
L
C
A
V
M
L
S
D
T
A
R
K
A
G
V
K
P
A
V
A
M
T
I
P
K
R
C
A
I
A
N
R
P
V
G
Y
K
C
G
P
Y
T
L
P
42
56.52
100%
-45
- C- -
M042
-
A:
[3-143]
A
G
E
C
G
R
V
P
V
D
Q
V
A
L
K
L
A
P
C
A
A
A
T
Q
N
P
R
A
A
V
P
P
S
C
C
A
Q
V
R
A
I
G
R
V
P
K
C
L
C
A
V
M
L
S
D
T
A
R
K
A
G
V
K
P
A
V
A
M
T
I
P
K
R
C
A
I
A
N
R
P
V
G
Y
K
C
G
P
Y
T
L
P
45
37.91
100%
-2
- C- -
M045
-
A:
[6-152]
A
G
E
C
G
R
V
P
V
D
Q
V
A
L
K
L
A
P
C
A
A
A
T
Q
N
P
R
A
A
V
P
P
S
C
C
A
Q
V
R
A
I
G
R
V
P
K
C
L
C
A
V
M
L
S
D
T
A
R
K
A
G
V
K
P
A
V
A
M
T
I
P
K
R
C
A
I
A
N
R
P
V
G
Y
K
C
G
P
Y
T
L
P
44
37.29
100%
6
- C- -
M044
-
A:
[6-152]
A
G
E
C
G
R
V
P
V
D
Q
V
A
L
K
L
A
P
C
A
A
A
T
Q
N
P
R
A
A
V
P
P
S
C
C
A
Q
V
R
A
I
G
R
V
P
K
C
L
C
A
V
M
L
S
D
T
A
R
K
A
G
V
K
P
A
V
A
M
T
I
P
K
R
C
A
I
A
N
R
P
V
G
Y
K
C
G
P
Y
T
L
P