@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : new_query: (2014-05-14 )
TVPCGTVDMKAAACVGYATGKEPKPSPACCSGLQQLAGTVKTVDDKKNICRCLKNGVKAFAGVQDKFLSQIPAVCNIKVGFPVSLNTNCEA
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......--..--10---........----20----.------------.-----------------..-----..-----------------..---30........-----------40-----------........50..--...-.---..60----.-------.---.-------.----------....----------.70--........80......---..90------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------TVPCGTV--DM--KA---AACVGYAT----GK----E------------P-----------------KP-----SP-----------------AC---CSGLQQLAGT-----------VK-----------TVDDKKNICRCL--KNG-V---KAF-----A-------G---V-------Q----------DKFL----------SQI--PAVCNIKVGFPVSLNT---NCEA------------------------------------------------------
24
HHSearch
92.04
29%
-114
- C1 -
2ALG
2
NLTP1_PRUPE
A:
[1-90]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
T
C
G
Q
V
--
S
S
--
S
L
---
A
P
C
I
P
Y
V
R
----
G
G
-----------------
G
-----------------
A
V
-----
P
P
-----------------
A
C
---
C
N
G
I
R
N
V
N
N
L
-----------
A
R
-----------
T
T
P
D
R
Q
A
A
C
N
C
L
--
K
Q
L
-
S
---
A
S
V
-----
P
-------
G
---
V
-------
N
----------
P
N
N
A
----------
A
A
L
--
P
G
K
C
G
V
S
I
P
Y
K
I
S
A
S
T
---
N
C
A
T
------------------------------------------------------
21
HHSearch
88.72
32%
-92
- C1 -
1AFH
-
NLTP_MAIZE
A:
[1-91]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
--
A
I
---
A
P
C
I
S
Y
A
R
----
G
Q
----
G
------------
S
-----------------
G
P
-----
S
A
-----------------
G
C
---
C
S
G
V
R
S
L
N
N
A
-----------
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
--
K
N
A
-
A
---
A
G
V
-----
S
-------
G
---
L
-------
N
----------
A
G
N
A
----------
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
---
D
C
S
R
------------------------------------------------------
11
SP3
87.33
31%
-93
- C1 -
1FK5
4
NLTP_MAIZE
A:
[1-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
S
C
G
Q
V
--
A
S
--
A
I
---
A
P
C
I
S
Y
A
R
----
G
Q
----
G
------------
S
-----------------
G
P
-----
S
A
-----------------
G
C
---
C
S
G
V
R
S
L
N
N
A
-----------
A
R
-----------
T
T
A
D
R
R
A
A
C
N
C
L
--
K
N
A
-
A
---
A
G
V
-----
S
-------
G
---
L
-------
N
----------
A
G
N
A
----------
A
S
I
--
P
S
K
C
G
V
S
I
P
Y
T
I
S
T
S
T
---
D
C
S
R
VN----------------------------------------------------
22
HHSearch
86.61
27%
-110
- C1 -
1T12
-
NLTP1_TOBAC
A:
[1-89]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
I
T
C
G
Q
V
--
T
S
--
N
L
---
A
P
C
L
A
Y
L
R
----
N
T
----
G
-------------------------------
P
-----
L
G
-----------------
R
C
---
C
G
G
V
K
A
L
V
N
S
-----------
A
R
-----------
T
T
E
D
R
Q
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A
C
T
C
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--
K
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A
-
A
---
G
A
I
-----
S
-------
G
---
I
-------
N
----------
L
G
K
A
----------
A
G
L
--
P
S
T
C
G
V
N
I
P
Y
K
I
S
P
S
T
---
D
C
S
K
------------------------------------------------------
26
HHSearch
86.28
27%
-115
- C1 -
1SIY
-
NLTP1_VIGRR
A:
[1-89]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
C
G
Q
V
--
Q
G
--
N
L
---
A
Q
C
I
G
F
L
Q
----
K
G
----
G
------------------------------
V
V
-----
P
P
-----------------
S
C
---
C
T
G
V
K
N
I
L
N
S
-----------
S
R
-----------
T
T
A
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R
A
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C
S
C
L
--
K
A
A
-
A
---
G
A
V
-----
R
-------
G
---
I
-------
N
----------
P
N
N
A
----------
E
A
L
--
P
G
K
C
G
V
N
I
P
Y
K
I
S
T
S
T
---
N
C
N
S
------------------------------------------------------
25
HHSearch
86.20
29%
-98
- C1 -
1BWO
2
NLTP1_WHEAT
A:
[1-89]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
D
C
G
H
V
--
D
S
--
L
V
---
R
P
C
L
S
Y
V
Q
----
G
G
-----------------
P
-----------------
G
P
-----
S
G
-----------------
Q
C
---
C
D
G
V
K
N
L
H
N
Q
-----------
A
R
-----------
S
Q
S
D
R
Q
S
A
C
N
C
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--
K
G
I
-
A
---
R
G
I
-----
H
-------
N
---
L
-------
N
----------
E
D
N
A
----------
R
S
I
--
P
P
K
C
G
V
N
L
P
Y
T
I
S
L
N
I
---
D
C
S
R
------------------------------------------------------
37
HHSearch
66.31
29%
-102
- C1 -
1SM7
-
?
A:
[14-101]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
L
---
R
A
C
Q
Q
W
I
R
----
Q
Q
----
L
AG
S
---------
P
F
S
E
NQWGPQQGP-----
S
L
-----
R
E
-----------------
Q
C
---
C
N
E
L
Y
Q
E
------------------------------
D
Q
V
C
V
C
P
T
L
--
K
Q
A
-
A
---
K
S
V
-----
R
VQ-----
G
Q--
H
-------
G
PFQST
R
I
---
Y
Q
I
A
----------
K
N
L
--
P
N
V
C
N
M
K
Q
I
--------------------------------------------------------------------
32
HHSearch
66.31
22%
-117
* C1 *
1BEA
-
ITRF_MAIZE
A:
[15-109]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
--
P
L
---
P
S
C
R
W
Y
V
T
S
R
TC
G
I
----
G
------------
P
-----------------
R
L
P
W
P
E
L
K
R
-----------------
R
C
---
C
R
E
L
A
D
I
------------------------------
P
A
Y
C
R
C
T
A
L
--
S
I
L
-
M
---
D
G
A
-----
I
P
P
G
PDAQ
L
E
G
R
L
-------
E
D
LPGCP
R
E
V
Q
R
G
F
A
----------
A
T
L
VT
E
A
E
C
N
L
A
T
I
--------------------------------------------------------------------
27
HHSearch
63.33
25%
-98
- C1 -
2RKN
2
DIRL1_ARATH
A:
[3-75]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
L
C
G
M
S
--
Q
D
--
E
L
---
N
E
C
K
P
A
V
S
----
K
E
----
N
------------
P
T----------------
S
P
-----
S
Q
-----------------
P
C
---
C
T
A
L
Q
H
A
------------------------------
D
F
A
C
L
C
G
Y
K
--
N
S
P
W
L
---
G
S
F
-------------
G
---
V
-------
D
----------
P
E
L
A
----------
S
A
L
--
P
K
Q
C
G
L
A
N
A
P
-------------------------------------------------------------------
2
Fugue
62.17
24%
-67
- C1 -
2RKN
2
DIRL1_ARATH
A:
[1-77]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------A
I
D
L
C
G
M
S
--
Q
D
--
E
L
---
N
E
C
K
P
A
V
S
----
K
E
----
N
------------
P
T----------------
S
P
-----
S
Q
-----------------
P
C
---
C
T
A
L
Q
H
A
------------------------------
D
F
A
C
L
C
G
Y
K
--
N
S
P
-
W
---
L
G
S
-----
F
-------
G
---
V
-------
D
----------
P
E
L
A
----------
S
A
L
--
P
K
Q
C
G
L
A
N
------
A
P
---
T
C
--------------------------------------------------------
7
Fugue
54.13
19%
-61
- C1 -
1S6D
-
2SS8_HELAN
A:
[1-103]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------P
Y
G
R
G
R
T
E
S
G
C
Y
Q
Q
--
M
E
--
E
A
EML
N
H
C
G
M
Y
L
M
----
K
N
----
L
GERSQVSPR
M
R
E
E
-----------------
D
H
-----
K
Q
-----------------
L
C
---
C
M
Q
L
K
N
L
------------------------------
D
E
K
C
M
C
P
A
I
--
M
M
M
-
L
---
N
E
P
MWIRM
R
-------
D
---
Q
-------
V
----------
M
S
M
A
----------
H
N
L
--
P
I
E
C
N
L
M
-------
S
Q
---
P
C
Q
M
------------------------------------------------------
20
SP3
53.91
9%
-113
- C1 -
1QPO
-
NADC_MYCTU
A:
[1-284]
GLS
D
W
E
L
A
A
A
R
A
A
I
A
R
G
L
D
E
D
L
RYGPD
V
T
T
L
A
T
VPAS
A
T
T
T
A
S
LVTR
E
A
G
V
V
A
G
L
D
V
A
L
L
T
L
N
E
V
LGTNGYRVL
D
R
V
E
DGARVPPGEAL
M
T
L
E
A
Q
T
R
G
L
L
T
A
E
R
T
M
L
N
L
V
G
H
L
S
G
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
--
A
A
A
G
S
V
---
V
D
A
L
R
A
V
R
----
N
------------------
A
-----------------
A
P
-----
D
L
-----------------
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
-----------
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
--
D
S
R
-
A
---
P
T
V
M
L
E
S
S
G
-------
G
---
L
-------
S
----------
L
Q
T
A
----------
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
A
---
L
T
H
S
VRVL
D
I
G
L
D
M--------------------------------------------
36
HHSearch
51.79
20%
-85
- C1 -
3OB4
-
?
A:
[429-486]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
-----------------
R
C
---
C
N
E
L
N
E
F
E
----------------------------
N
N
Q
R
C
M
C
E
A
L
--
Q
Q
I
-
M
---
E
N
Q
S
DRL-
Q
-------
G
---
R
-------
Q
Q
E
Q
Q
F
-----
K
R
E
L
----------
R
N
L
--
P
Q
Q
C
G
L
R
A
P
Q
-------------------------------------------------------------------
18
SP3
50.08
9%
-113
- C1 -
1QPO
-
NADC_MYCTU
A:
[116-284]
-------------------------------------------------------------------------------------------------------------------
I
A
T
A
T
A
A
W
V
D
A
V
RGTK
A
K
I
R
D
T
RKTLPGL
R
A
L
Q
K
Y
A
V
R
T
G
G
G
V
N
H
R
LGLGD
A
A
L
I
K
D
N
H
V
--
A
A
A
G
S
V
---
V
D
A
L
R
A
V
R
----
N
------------------
A
-----------------
A
P
-----
D
L
-----------------
P
C
E
V
E
V
D
S
L
E
Q
L
D
A
V
-----------
L
P
EKPE
L
I
L
LDNF
A
V
W
Q
T
Q
T
A
V
Q
R
R
--
D
S
R
-
A
---
P
T
V
M
L
E
S
S
G
-------
G
---
L
-------
S
----------
L
Q
T
A
----------
A
T
Y
---
A
E
T
G
V
D
Y
---
L
A
V
G
A
---
L
T
H
S
VRVL
D
I
G
L
D
M--------------------------------------------
29
HHSearch
49.49
22%
-42
- C1 -
1N89
1
NLT2G_WHEAT
A:
[5-65]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
--
Q
L
---
A
V
C
A
S
A
I
L
----
S
G
----
A
------------------------------
K
P
-----
S
G
-----------------
E
C
---
C
G
N
L
R
A
---------------------------------
Q
Q
G
C
F
C
Q
YA
K
D
P
T
Y
---
G
Q
--------------
Y
---
I
-------
R
----------
S
P
H
A
----------
R
D
T
--
L
T
S
C
G
L
A
V
P
--------------------------------------------------------------------
30
HHSearch
48.65
30%
-80
- C1 -
1PNB
-
?
B:
[12-67]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
-----------------
Q
C
---
C
N
E
L
Y
Q
E
------------------------------
D
Q
V
C
V
C
P
T
L
--
K
Q
A
-
A
---
K
S
V
-----
R
VQGQHG-
P
---
F
QSTR---
I
----------
Y
Q
I
A
----------
K
N
L
--
P
N
V
C
N
M
K
Q
I
--------------------------------------------------------------------
34
HHSearch
47.18
14%
-83
- C1 -
1PSY
-
2SS_RICCO
A:
[25-121]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
--
D
L
---
S
S
C
E
R
Y
L
R
----
Q
S
S
S
R
R
S
------------
T
GEEVLRMPGDENQQQES
Q
Q
-----
L
Q
-----------------
Q
C
---
C
N
Q
V
K
Q
V
------------------------------
R
D
E
C
Q
C
E
A
I
--
K
Y
I
-
A
---
E
D
Q
-----
I
Q
Q
G
----
Q
---
L
HGEE
S
E
R
V
----------
A
Q
R
A
----------
G
E
I
--
V
S
S
C
G
V
--
R
C
M
R
Q
----------------------------------------------------------------
5
Fugue
46.91
18%
-58
* C2 *
4B8V
3
?
A:
[36-224]
-----------------------------------------------------------------------------------------------------------------------CGSTSNIK
Y
T
V
V
KGDT
L
T
S
I
A
K
K
F
KSG
I
C
N
I
V
S
V
N
KLANPNLIELG
A
T
L
I
I
P
E
N
C
S
--
N
P
--
D
N
---
K
S
C
V
S
--------
T
----
P
------------
A
-----------------
E
P
-----
T
E
-----------------
T
C
---
V
P
G
L
P
G
-
S
Y
T
-----------
I
V
-----------
S
G
D
T
L
T
N
I
S
Q
D
F
--
N
I
T
-
L
---
D
S
L
-----
I
-------
A
---
A
-------
N
----------
T
Q
I
E
----------
N
P
D
--
A
I
D
V
G
Q
I
I
T
V
P
V
C
P
S
S
---
Q
C
E
A
V
G
T
Y
N
I
V
AGDL
F
V
D
L
A
A
T
Y
HTT
I
G
Q
I
K
A
L
N
NNVNPSKLKVG
Q
Q
I
I
L
P
Q
D
C
K
N
V
T
9
Fugue
46.47
13%
-60
- C1 -
1W2Q
-
CONG_ARAHY
A:
[1-127]
------------------------------------------------------------------------------------------------------------------------------------------------------------GPMRRERGRQGD
S
S
S
C
E
R
Q
V
D
R
V
--
N
L
---
K
P
C
E
Q
H
I
M
----
Q
R
----
I
------------
M
-----------------
G
E
-----
Q
E
QYDSYDIRSTR
S
S
D
Q
Q
Q
R
C
---
C
D
E
L
N
E
M
E
N
T
-----------
Q
G
-----------
C
M
C
E
A
L
Q
Q
I
M
E
N
--
Q
C
D
-
R
LQD
R
Q
M
-----
V
-------
Q
---
Q
-------
F
----------
K
R
E
L
----------
M
S
L
--
P
Q
Q
C
N
F
R
A
P
Q
R
C
D
L
D
V
SGG
R
C
S
-------------------------------------------------------
4
Fugue
44.97
19%
-25
- C1 -
2W0C
-
P6_BPPM2
T:
[1-127]
--------------------------------------------------------------------------------------------------------------------------------------------------------------MANFLTKNFV
W
I
L
A
A
G
V
--
G
V
--
W
F
---
Y
Q
K
A
D
N
A
A
----
K
T
----
A
------------
T
-----------------
K
P
-----
I
A
-----------------
D
F
---
L
A
E
L
Q
F
L
V
N
G
SNYVKFPNAGF
V
L
-----------
T
R
D
A
L
Q
D
D
F
I
A
Y
--
D
D
R
-
I
---
K
A
W
-----
L
-------
G
---
T
-------
H
----------
D
R
H
K
DFLAEILDHE
R
R
V
--
K
P
V
Y
R
K
L
I
G
N
I
I
D
A
S
T
---
I
R
A
A
SGVEL-------------------------------------------------
User Run . : Multi Template Modeling Result:
(2 SA)
.........10........20........30........40........50........60........70........80........90
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
TVPCGTVDMKAAACVGYATGKEPKPSPACCSGLQQLAGTVKTVDDKKNICRCLKNGVKAFAGVQDKFLSQIPAVCNIKVGFPVSLNTNCEA
45
96.53
100%
-116
- C- -
M045
-
A:
[1-91]
T
V
P
C
G
T
V
D
M
K
A
A
A
C
V
G
Y
A
T
G
K
E
P
K
P
S
P
A
C
C
S
G
L
Q
Q
L
A
G
T
V
K
T
V
D
D
K
K
N
I
C
R
C
L
K
N
G
V
K
A
F
A
G
V
Q
D
K
F
L
S
Q
I
P
A
V
C
N
I
K
V
G
F
P
V
S
L
N
T
N
C
E
A
44
94.91
100%
-116
- C- -
M044
-
A:
[1-91]
T
V
P
C
G
T
V
D
M
K
A
A
A
C
V
G
Y
A
T
G
K
E
P
K
P
S
P
A
C
C
S
G
L
Q
Q
L
A
G
T
V
K
T
V
D
D
K
K
N
I
C
R
C
L
K
N
G
V
K
A
F
A
G
V
Q
D
K
F
L
S
Q
I
P
A
V
C
N
I
K
V
G
F
P
V
S
L
N
T
N
C
E
A