@TOME V2.3
(Nov 2016)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : Wbm0137: (2015-11-28 )
MLSRVKVNKDNKNANSGKQARFDLNRMNFMINGKIVDKEYIIRLYGENNYLIPNGSEDYRLFAKRVFTGMFEYAKAEVPNNRILEKLVINCNQAGYEFAIYE
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.......------.20...-..--.-..30......--..40...---.....50.....------------...60....--..-------..70........80-........90........100-----------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLS
R
V
K
VNKDNKNANSGK------
Q
A
R
F
D
L-NR--
M
-
N
F
M
IN
G
K
I
V
D
--
K
E
Y
I
I
R
L
---YGEN
N
Y
LIPNGS------------
E
D
Y
R
L
F
A
K
R
--
V
F
-------
T
G
M
F
E
Y
A
KAEVP
N
N
-
R
I
L
E
K
L
V
I
NCNQAG
Y
E
F
AIYE-----------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
82.75
29%
5
- C5 -
1L8K
-
PTN2_HUMAN
A:
[35-125]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
V
A
K
F
P
E
N
R
N
R
N
R
Y
R
DVSPYD
H
S
R
V
K
L
Q
N
A
--
E
-
N
D
Y
I
N
A
S
L
V
D
--
I
E
E
A
Q
R
S
---
Y
I
L
T
Q
G
P
L
P
N
T
C
------------
C
H
F
W
L
M
V
W
Q
---------------
Q
K
T
K
A
V
V
M
L
N
-
R
I
V
E
K
E
S
V
K
C
A
Q
Y
W
P
T
D
D
Q
E
M
-----------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
74.04
28%
-93
- C5 -
3HU7
-
?
A:
[92-151]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
V
---
Y
L
F
N
N
F
L
L
P
P
G
H
------------
S
E
N
R
P
F
G
N
A
--
V
L
-------
D
G
I
D
F
H
I
E
H
G
G
P
S
Q
Y
Q
L
L
A
N
I
L
S
S
F
R
L
A
G
T
E
F
A
L
T
A
-----------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
70.78
28%
-88
- C5 -
3D5H
-
?
A:
[92-151]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
V
---
Y
L
F
N
N
F
L
L
P
P
G
H
------------
S
E
N
R
P
F
G
N
A
--
V
L
-------
D
G
I
D
F
H
I
E
H
G
G
P
S
Q
Y
Q
L
L
A
N
I
L
S
S
F
R
L
A
G
T
E
F
A
L
T
A
-----------------------------------------------------------------------------------------------------------------------------
30
Fugue
70.68
17%
-55
- C6 -
4MFL
7
?
A:
[23-345]
MD
P
E
T
V
R
I
A
L
GLEERT
A
A
W
L
T
E
L
D
E
L
GPPAE
P
V
R
L
P
R
G
E
E
A
R
D
L
L
R
R
L
EVP
E
L
D
A
E
E
I
V
A
A
APDPDRD
P
A
L
W
W
L
L
E
R
T
H
H
A
I
V
R
H
MGDHRAKPRGGPPLPYEGG
A
A
A
R
Y
F
H
V
Y
V
F
L
A
T
V
P
A
V
R
R
F
H
A
E
R
GIP
D
E
V
G
W
E
T
L
T
Q
L
G
E
L
V
A
I
H
R
R
K
YG
Q
G
G
M
NMQWWT
T
Y
H
L
R
GILYRLGR
L
Q
F
S
LATGKDG
T
P
H
L
G
L
A
V
P
EWGGPLL
P
K
A
Y
D
E
S
L
H
R
A
R
P
F
F
D
R
H
F
P
E
H
G
A
------
R
V
A
W
G
S
-
S
W
--
M
L
D
P
Q
L
E
E
Y
L
T
E
--
D
S
N
I
I
Q
L
A
R
F
W
T
L
T
D
S
A
P
E
P
G
N
------------
A
D
G
D
S
S
I
L
E
--
F
V
-------
F
R
Y
N
G
Q
P
L
D
E
L
P
Q
R
-
S
S
L
E
R
A
V
I
A
H
L
K
A
G
R
H
W
H
M
R
T
G
F
V
K
L
P-----------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
69.79
28%
-88
- C5 -
3OIH
-
?
A:
[92-151]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
V
---
Y
L
F
N
N
F
L
L
P
P
G
H
------------
S
E
N
R
P
F
G
N
A
--
V
L
-------
D
G
I
D
F
H
I
E
H
G
G
P
S
Q
Y
Q
L
L
A
N
I
L
S
S
F
R
L
A
G
T
E
F
A
L
T
A
-----------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
69.01
28%
-93
- C5 -
3M7S
1
?
A:
[92-151]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
V
---
Y
L
F
N
N
F
L
L
P
P
G
H
------------
S
E
N
R
P
F
G
N
A
--
V
L
-------
D
G
I
D
F
H
I
E
H
G
G
P
S
Q
Y
Q
L
L
A
N
I
L
S
S
F
R
L
A
G
T
E
F
A
L
T
A
-----------------------------------------------------------------------------------------------------------------------------
12
PsiBlast_PDB
66.36
25%
-66
- C5 -
3ZMK
-
?
A:
[76-133]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
V
T
K
---
Y
G
K
D
D
T
L
Y
P
K
D
P
V
Q
Q
A
R
V
N
A
A
L
H
F
E
S
G
V
L
F
A
R
M
R
F
I
F
-------
E
R
I
F
F
Y
G
K
S
D
I
P
E
D
-
R
V
E
Y
V
Q
K
S
Y
R
L
L
E
D
T
L
K
D
D
F
V
-----------------------------------------------------------------------------------------------------------------------------
28
Fugue
60.16
20%
-25
- C5 -
1C4Q
2
STXB_BPH19
A:
[1-69]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TPDC
V
T
G
K
V
E
Y
T
K
Y
N
D
----------------------------------
D
--
D
T
F
T
V
K
V
---
G
D
K
E
L
A
T
--
N
R
A
------------
N
L
Q
S
L
L
L
S
A
--
Q
I
-------
T
G
M
T
V
T
I
K
T
N
A
C
H
N
-
G
-----------
G
G
F
S
E
V
I
F
R
-----------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
54.70
30%
16
- C7 -
4O3Y
-
?
A:
[407-455]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
E
A
D
N
N
R
E
S
G
Y
------
R
S
E
F
D
V
-
N
F
--
G
-
D
K
K
V
S
G
K
L
F
D
--
K
G
G
I
V
P
V
---
F
M
I
N
A
D
I
K
G
N
G
F
------------
T
G
T
A
N
T
T
D
T
--
G
F
-------
A
L
D
S
S
Q
H
G
N
A
V
F
S
D
-
I
K
V
N
G
G
F
Y
G
P
T
A
G
E
L
G
G
Q
F
H
H
-----------------------------------------------------------------------------------------------------------------------------
29
Fugue
52.91
8%
-57
* C6 *
3P96
3
SERB_MYCA1
A:
[9-404]
---------------------------------------------------PK
V
S
V
L
I
T
V
T
G
VDQPG
V
T
A
T
L
F
E
V
L
S
R
H
GVELL
N
V
E
Q
V
V
I
RH
R
L
T
L
G
V
L
V
C
C
P
A
D
V
A
D
GP
A
L
R
H
D
V
E
A
A
I
R
K
V
G
L
D
V
S
I
E
R
S
DDVPI
I
R
E
P
ST
H
T
I
F
V
L
G
RPIT
A
A
A
F
G
A
V
A
R
E
V
A
A
L
GVNID
L
I
R
G
VSDYP
V
I
G
L
E
L
R
V
S
V
P
P
GA
D
E
A
L
R
T
A
L
N
R
V
S
S
E
E
H
V
D
V
A
V
E
D
Y
T
L
E
R
R
A
K
R
------
L
I
V
F
D
V
-
D
S
TL
V
-
Q
G
E
V
I
E
M
L
A
A
--
K
A
G
A
E
G
Q
---
V
A
A
I
T
D
A
A
M
R
G
E
------------
L
D
F
A
Q
S
L
Q
Q
--
R
V
A
T
L
AGLP
A
T
V
I
D
E
V
A
G
Q
L
E
L
M
-
P
G
A
R
T
T
L
R
T
L
R
R
L
G
Y
A
C
G
V
V
S
GGF
R
R
I
I
E
P
L
A
E
E
L
MLD
Y
V
A
A
N
E
L
E
I
V
DGTLTGRVVGPIID
R
A
G
K
A
T
A
L
R
E
F
A
Q
R
A
GVPMAQ
T
V
A
V
G
D
G
AND
I
D
M
L
A
A
AG
L
G
I
A
F
NAK
P
A
L
R
E
V
ADASLSHPYLD
T
V
L
F
L
L
GVT
R
G
E
I
E
A
A
D
A
I
D
6
PsiBlast_PDB
51.76
30%
14
- C7 -
3PQS
-
?
A:
[405-453]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
E
A
D
N
N
R
E
S
G
Y
------
R
S
E
F
D
V
-
N
F
--
G
-
D
K
K
V
S
G
K
L
F
D
--
K
G
G
I
V
P
V
---
F
M
I
N
A
D
I
K
G
N
G
F
------------
T
G
T
A
N
T
T
D
T
--
G
F
-------
A
L
D
S
G
S
S
Q
H
G
N
A
V
F
-
S
D
I
K
V
N
G
G
F
Y
G
P
T
A
G
E
L
G
G
Q
F
-----------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
50.67
30%
14
- C7 -
4O3Z
-
?
A:
[407-455]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
E
A
D
N
N
R
E
S
G
Y
------
R
S
E
F
D
V
-
N
F
--
G
-
D
K
K
V
S
G
K
L
F
D
--
K
G
G
I
V
P
V
---
F
M
I
N
A
D
I
K
G
N
G
F
------------
T
G
T
A
N
T
T
D
T
--
G
F
-------
A
L
D
S
Q
H
G
N
A
V
F
S
D
I
-
K
V
N
G
G
F
Y
G
P
T
A
G
E
L
G
G
Q
F
H
H
K
-----------------------------------------------------------------------------------------------------------------------------
9
PsiBlast_PDB
50.38
30%
18
- C7 -
4O49
-
?
A:
[407-455]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
A
E
A
D
N
N
R
E
S
G
Y
------
R
S
E
F
D
V
-
N
F
--
G
-
D
K
K
V
S
G
K
L
F
D
--
K
G
G
I
V
P
V
---
F
M
I
N
A
D
I
K
G
N
G
F
------------
T
G
T
A
N
T
T
D
T
--
G
F
-------
A
L
D
S
Q
H
G
N
A
V
F
S
D
I
-
K
V
N
G
G
F
Y
G
P
T
A
G
E
L
G
G
Q
F
H
H
K
-----------------------------------------------------------------------------------------------------------------------------
24
Fugue
48.42
38%
-81
- C5 -
3QKS
-
MRE11_PYRFU
C:
[353-379]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
F
E
L
-
K
I
--
I
-
D
I
L
------
D
--
F
D
Y
I
I
K
L
---
I
T
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
44.45
19%
-27
* C5 *
3N7N
-
LRS4_YEAST
E:
[3-33]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
--
L
L
-------
Q
L
L
S
N
Y
Y
K
A
K
L
D
S
E
-
R
I
Y
N
E
Y
V
Q
S
Q
Y
E
F
A
------------------------------------------------------------------------------------------------------------------------------------
11
PsiBlast_PDB
43.67
34%
66
- C7 -
3PQU
-
?
A:
[454-485]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
E
A
D
N
N
R
E
S
G
Y
------
R
T
E
F
D
V
-
N
F
--
S
-
D
K
K
V
N
G
K
L
F
D
--
K
G
G
V
N
P
V
---
F
T
V
D
A
T
I
N
G
N
G
F
------------
I
G
S
A
K
T
S
D
S
--
G
F
-------
A
L
D
S
Q
H
G
N
A
V
F
S
D
I
-
K
V
N
G
G
F
Y
G
P
T
A
G
E
L
G
G
Q
F
H
H
K
-----------------------------------------------------------------------------------------------------------------------------
18
HHSearch
43.19
17%
-19
- C5 -
1AW0
-
A:
[54-71]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
T
L
R
G
A
I
E
D
M
G
F
D
A
T
L
S
D
-----------------------------------------------------------------------------------------------------------------------------
10
PsiBlast_PDB
41.87
34%
82
- C7 -
4O3W
-
?
A:
[456-487]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
E
A
D
N
N
R
E
S
G
Y
------
R
T
E
F
D
V
-
N
F
--
S
-
D
K
K
V
N
G
K
L
F
D
--
K
G
G
V
N
P
V
---
F
T
V
D
A
T
I
N
G
N
G
F
------------
I
G
S
A
K
T
S
D
S
--
G
F
-------
A
L
S
Q
H
G
N
A
V
F
S
D
I
K
-
V
N
G
G
F
Y
G
P
T
A
G
E
L
G
G
Q
F
H
H
K
S
-----------------------------------------------------------------------------------------------------------------------------
19
HHSearch
40.75
22%
58
* C7 *
2KD2
-
FAIM1_MOUSE
A:
[95-128]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
T
T
S
T
W
V
L
R
L
D
G
E
------
D
L
R
V
V
L
-
E
K
DT
M
-
D
V
W
C
N
G
Q
K
M
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
37.06
14%
-39
- C5 -
2X5Q
-
CMR7A_SULSO
A:
[135-188]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
R
D
K
V
------
T
S
F
V
S
L
-
D
R
D
-
V
-
A
K
T
I
V
D
N
V
L
A
K
I
Y
A
K
I
Y
N
S
---
L
N
K
E
-----
Q
K
D
------------
K
-----
L
Y
R
--
D
V
-------
E
E
I
F
N
Y
Y
S
I
K
S
L
K
S
-
N
-------------------------------------------------------------------------------------------------------------------------------------------------